Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1014 ATGGCATTGAACCAAAACCATTTCTTGAAGCTTGAATATCAAGCTCTCACTTCCATCAAAACCCAGGCTAATTCACTCCATCACCAACCACCACAACAACATGCTTCACACTATGCTTTTCCCATATTTGCCATTGTTGTGCTAACCATCTTGGCTAGTGCTTTTTTGCTCATCAGCTACTTCACTTTCTTAGCCAAATGCTTCTATCAACTTAACCCACTGAGATGGATTTCCATCCTGAGATCTCAGCAGGGTGAGGATCCCTTCATAGCATTCTCTCCCACCATGTGGAATAACCGTGGTCTTGATGAATCTCTCATAAGACAAATCCCAACATTTCAGTTCATAAAAGGTGGACAAGTTAAGGATCAAAGTGTGTATGCTTGTGTGGTTTGTTTGATAGAGTTTCAAGAACATGATATGCTAAAAATTCTACCAAGTTGCAGCCATGCATTTCACTTGGATTGCATTGATATTTGGCTTCAAACCAATGACAATTGCCCTCTTTGTAGATCAAGCATTCAAGGCAAAACACATTACCCTTTTGACCATGAAATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAATTACTATATAACATGGACAGTGATGACGATTTTGTAGTCATTGAACTAGGAAGAGAACAAAATGGAGAAGGGAGAGTAATGCAACAAGTGCAACAAGAAAGAAATGACTCAAGGGAAAGCCTAGTACATGATAGAAGTAACTCTGAAAAAAAGCTTGAATCCAAACCAAGGAAGTGTCACCATGTTTCTATCATGGGAGATGAGTACATTGAAGTTGAGAAGAAAGATGAACAGTTTTTCATTCAACCTATTAGAAGATCTTTCTCAATGGATTCTGCTAATGATAGATAA 879 0.3868 MALNQNHFLKLEYQALTSIKTQANSLHHQPPQQHASHYAFPIFAIVVLTILASAFLLISYFTFLAKCFYQLNPLRWISILRSQQGEDPFIAFSPTMWNNRGLDESLIRQIPTFQFIKGGQVKDQSVYACVVCLIEFQEHDMLKILPSCSHAFHLDCIDIWLQTNDNCPLCRSSIQGKTHYPFDHEIAPSSSPQDSQLLYNMDSDDDFVVIELGREQNGEGRVMQQVQQERNDSRESLVHDRSNSEKKLESKPRKCHHVSIMGDEYIEVEKKDEQFFIQPIRRSFSMDSANDR 292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1014 292 MobiDBLite consensus disorder prediction 228 252 - -
Lal13g1014 292 MobiDBLite consensus disorder prediction 232 252 - -
Lal13g1014 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 177 IPR013083 -
Lal13g1014 292 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 292 - -
Lal13g1014 292 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Lal13g1014 292 SUPERFAMILY RING/U-box 108 177 - -
Lal13g1014 292 PANTHER RING-H2 FINGER PROTEIN ATL16 1 292 IPR044600 GO:0016567|GO:0016740
Lal13g1014 292 CDD RING-H2_PA-TM-RING 129 171 - -
Lal13g1014 292 SMART ring_2 129 170 IPR001841 -
Lal13g1014 292 Pfam Ring finger domain 129 171 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal13g1014 Lal-Chr13 7466124 7467002 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1014 31 292 C3H Transcription Factor Family AT1G04360 41.724 1.57e-62 200
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1014 K19041 - gmx:100809883 390.193
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1014 13 7466124 7467002 Lal13g1014 13 7466124 7467002 ECH