Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1012 ATGAAGACTTCGAACGATTGTTCAGCTTCTCCATCGTTGAGATCAAAGAAGAATCACAACCATAATCTCCGAAGCCCAAAGCCCAAATCTTCTGACCCTATTTCACTGAGCTCCAAAACCCCAGAGAAGACCGTTGAGCTCACACCTCGATTGAGAAACCGAGGCGTGGCGCTCTCCGTCTCTGAGATCAGGAAGGTCGCCAAAGGGCTTCACGATCAGAATCATAGAAAGAAAGAGAGTGAATTGGCGTTGGTGAAGGGTAAATCTGTCAAAAGGAAGATTTCAATGCCTTCACCGAGTAAATCCAAAACTGCCTCTGATGAACCCAAGATTCCAGAAAAGTATGAAATTTTGTGTGAGTTCTTCCATGGCTTGGATTCCTCGATTCGATTGACGCAAATGAAAGGTAGAATGCCGAGTTTCACAAATATTGCCCCCAAGATTGAATGTTTAAGTGATAGGAGGTTTACACTTGGTCATTTGGCCCAGTTGAAATTTATCTTACCTGAGGGAATTCTGATTAAGAGGGTACAAGTGTTTGATGAAAGGACGAGTTGTATGAAGCCGGATCTACATGTTACTATAAATCGCGATGCGATATTGTCCGATGCGAAGTTGCTTCCTAAATGTGACAGTATGTCTGAGAGTATGCAAATGAGGCTGTTATTTCGCACAAAGCTTGGGGAATTTTGTAAATCCCATCCCGAGGGTGATGAAATTCCAGAAGCTGTATTGCCGGAACCATTCAGTCGTCCAAAACAAGATTGTTTTTCGGACATATTGAAAACTCCCTCCTTGGCTCATCCTCCAACAGTATTATCATCAAGGATGCTGGATAATGACATTGTTGATTATATAGAGTCTAACAGAGAGAAACACATGTCAGTAGTCAAGACATCAATTGAAGCACTTGACCAACAACCAGCAGTAGCCTCTCATTTGTCTCAATCTTTCAGAAGTCGGTTTTGGCAAAAATCAAAGGAAAACAGAGCAGATATTTTACAGCAGAATTTGGGATCAGATTCATTCCAAACCCTATCTCATCCAGTTTCAGAGTCAAATCCCCTACAGAAAAGTCTCCCCTTGGTGGGCACTGGATCTACATTCCCAGTTAAGATGGTTTCAGAAGCTGCTAGTAGTGAAATATGTCCAACAATTTGTGCTTCTTCAAGCTACTTTGAATCATCTAGTGCTCCAACTGCTGCTACTCCGAGCAAAACCATTGAGTATACATCAACTCCAGTTAAACTTGTTGATACTCCATCCAGGCCGATGACAGTGACTCCTTCAATTCATCCATCTAAAAAACATTACATTACCCCGGATGACAACTCTTCCAGTTCAATGAACAAATTAGCTAGGCGTCCACCTCGTTCAACAAGGTCATTGAAATTTGACTCTCCAATGAAAAATAAGGAGACGGAGGATAAAAATGTTGCTTGTGGCTTATCAATCAATGATGATATTTTTGATATCCTCCCGGAGAGTCTTCTTGAATCGATTTGGGAAAAGGAAAAAGTGACAATGGAGGAAAGAGATCCAGCTATCTCTCAAGCAAAGAGACGGCAAAAAATGATTGCCAGCCTCCCTAAGCTCTTTAATATGATTCACCTCATGTTTCATTCAATGAACTGTTCTCTCATCACAAAAGCAGAGCTTGTAAAGAAGATAATCTCAGGCCATCGCGATATTGTTGACAAAAGAGAGATTGAAGAACAGCTAAACTTGTTACTAGAACTAGTACCAGAATGGATTTATGAGAAGTTAACCTCTAGTGGGGACATCCTCTTGGGCATCAACAAAACATTGAACCCTGGGACCATTCGAGCATCACTTGAAGCAGCAAAATGA 1851 0.4149 MKTSNDCSASPSLRSKKNHNHNLRSPKPKSSDPISLSSKTPEKTVELTPRLRNRGVALSVSEIRKVAKGLHDQNHRKKESELALVKGKSVKRKISMPSPSKSKTASDEPKIPEKYEILCEFFHGLDSSIRLTQMKGRMPSFTNIAPKIECLSDRRFTLGHLAQLKFILPEGILIKRVQVFDERTSCMKPDLHVTINRDAILSDAKLLPKCDSMSESMQMRLLFRTKLGEFCKSHPEGDEIPEAVLPEPFSRPKQDCFSDILKTPSLAHPPTVLSSRMLDNDIVDYIESNREKHMSVVKTSIEALDQQPAVASHLSQSFRSRFWQKSKENRADILQQNLGSDSFQTLSHPVSESNPLQKSLPLVGTGSTFPVKMVSEAASSEICPTICASSSYFESSSAPTAATPSKTIEYTSTPVKLVDTPSRPMTVTPSIHPSKKHYITPDDNSSSSMNKLARRPPRSTRSLKFDSPMKNKETEDKNVACGLSINDDIFDILPESLLESIWEKEKVTMEERDPAISQAKRRQKMIASLPKLFNMIHLMFHSMNCSLITKAELVKKIISGHRDIVDKREIEEQLNLLLELVPEWIYEKLTSSGDILLGINKTLNPGTIRASLEAAK 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1012 616 MobiDBLite consensus disorder prediction 440 455 - -
Lal13g1012 616 SMART CDT1_2 111 247 IPR014939 -
Lal13g1012 616 MobiDBLite consensus disorder prediction 1 52 - -
Lal13g1012 616 MobiDBLite consensus disorder prediction 1 16 - -
Lal13g1012 616 Gene3D - 486 616 IPR038090 -
Lal13g1012 616 MobiDBLite consensus disorder prediction 86 109 - -
Lal13g1012 616 Pfam DNA replication factor Cdt1 C-terminal domain 496 587 IPR032054 -
Lal13g1012 616 Pfam DNA replication factor CDT1 like 112 217 IPR014939 -
Lal13g1012 616 CDD Cdt1_m 96 253 IPR014939 -
Lal13g1012 616 PANTHER DNA REPLICATION FACTOR CDT1 16 616 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lal13g1012 616 MobiDBLite consensus disorder prediction 419 472 - -
Lal13g1012 616 SUPERFAMILY "Winged helix" DNA-binding domain 103 249 IPR036390 -
Lal13g1012 616 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1012 Lal-Chr13 7450350 7454027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1012 32 613 Core DNA Replication Machinery Family AT2G31270 37.686 2.28e-92 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1012 K10727 - gmx:100778818 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1012 13 7450350 7454027 Lal13g1012 13 7450350 7454027 ECH
Lal13g1012 13 7450350 7454027 Lal24g0777 24 6036417 6040270 LSH