Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1011 ATGGAGATGGGTACTAAGTTGCAGCAATTGCTCAGAAGCCTATGTTTGAATACTGAGTGGAAATATGCCATCTTTTGGAAGCTCAAACATCGTGCTAGGATGATGTTGACATGGGAGGATGCTTACTATGACAATCCTGATGATTATAACACTCCAGAAAATAAGTGCTACCAGAAGACCTTGGAACAGATTGGTGGTGGGAATTTTCCGCATGACCCTCTAGGTTTAGCTTTGGCGAAGATGTCATATCAAGTATATTCTTTAGGCGAAGGTGTTGTTGGACAGGTAACTGTTACTGGAAAGCATGAGTGGATCTATGCAGATACTCAAGTTAGAGGTTGCGGGCAATCTTTTGAGTTTGCTGATGGGTGGCAATCTCAGTTTTCAGCTGGAGTTAGGACTGTTGTTGTTGTAGCAGTAGTCCCACTTGGAGTTGTTCAGATTGGATCTTTAAATAAAAAGTTACTTGGATCTGATTCTTACCATGGAATGTTCTATGATTTTGATGGATTGTTGAATATTTCCCTGATATATGTTGAATCTTTTATGCAGCAGGTTATTGAAGATATGCGGTTGGTAACTCATATCAGAAGTCTCTTTTTGTCTACACGAGATTACACCATAGGCTGTGTTCCTAGTCAAGCACAAAGTCGTGCAAAGAACTCTTCATCTCTGCTGGATGTATCTACCGAAACTTTGTCTTCTGAAGTTATGCCTGCTTATTCTCATGATACGGGTAAGACCATGAAGAGTGAAACACTGGATATGTTATTGCCCTTTCAATGTCCTGGGAAGAACTATTCACCTCCTGCTGTTTATCAGAAAATGGTTGTGGATGTGGCCGAGCATGAGAGGCTTGAATTTAAAAGCGATGGATGTTCCATTTTGCTTCAGTCGTTATCAAATATGATGAATACGGGGCCTCAAAATCTTGTAGAGATGAAATCTGAAACTGAGAAGATGTCCGGAGGAAACAATAGTGGATGCGAAGATACATGTTCCGAAGCAGAAAACAAATTCTCATCATTTTTACACAATTTGGTTATGGAGAATAATAGCTTCAATGATTTAATACATCCACCAGAAAACGTAGGAGTTCATTCTACATCCTTTCCTTCAGAATTTCTTGATGCAGTTTATTGTGAGAGTGACAAGTTATGTTATGTAGATATCAACCAAAATGGGGTGTCGAATGTACCCACATCTTCAGATGCGAACTCCCAAGAAGTTACTGAAAAGTTTCAAACCGAGCCTTGTTTCAAGGATACCTCATACACATTGAATTTCCCTGCTGGATGTGAGCTTCGTGAAGCACTTGGGCCAGGTTTTCTAAAAGGGAATAAATATTTTGATTGGGCTGCACAGATAAATCAAGATGATAAAACTGTTGAGATGCCAGATGAGATTAGCTGTAGCCAAATGACTTCTGAATCTCATCCAGAGCATCTTTTGGAGGCAATGGTGACCAATGTTTTCCATAGTAATAATGATATTAATAGCGAGTTATCATTTTCTAAATCAATGCAATCTGCAATGGCCTCAGAGAAAAATCATGAAGCTTCAATTCATACTGTGAGCACTATTAATTCCGAAGGCTTTTCGATAGATGAGTCCTCCCTTGTCAGAGTGGGCAAGCACCGTAGTTTGAGTTCATCAGGGATATGTGGTGTCCTATCCCCAAAAGGTTATTCTTCGGCATGTCCTAGTTCATGTAGTGAACAGTTTGAGAGGTCTTCTGAGCCAGCTAAGAGCAGCAAGAAGAGAGCTAGGCCGGGGGAAAGTAGTAGGCCTAGGCCAAGGGACAGACAGCTGATCCAAGACCGTATTAAGGAGCTGAGAGAACTCGTGCCAAATGGAGCAAAGTGCAGCATCGATTCCTTGCTGGAGTACACGATAAAGCACATGCTCTTTCTTCAAAGTGTAACTAAGTATGCTGACAAGCTAAATAAATTTGCCGATTCAAAGCCGAAGTTGCATCACATGGAAACAGATATTGATGGATCGTCTAGTTATCAACAGGGTTCAAGTTGGGCAATGGAAGTGGGGGGCCATCTGAAAATACGTTCAATATTAGTCGAAAATCTTAGTAAAAACGGGCAGATGCTTGTTGAGATGCTGTGTGAGGAGTGCAGCCATTTTCTTGAGATAGCTGAAGTCATAGGAAGCTTGGGCCTGACAATTTTGAAGGCTGCAACAGAAGCTCTTGGTGAGAAAACATGTATATGTTTTGTGGTTGAGGGCCAAAACAACAGAAATTTACACAGATTGGATATCTTATGGCCCCTTGTTCAATTACTGCAATCCAAGAGCACAATGCATTCATAA 2325 0.409 MEMGTKLQQLLRSLCLNTEWKYAIFWKLKHRARMMLTWEDAYYDNPDDYNTPENKCYQKTLEQIGGGNFPHDPLGLALAKMSYQVYSLGEGVVGQVTVTGKHEWIYADTQVRGCGQSFEFADGWQSQFSAGVRTVVVVAVVPLGVVQIGSLNKKLLGSDSYHGMFYDFDGLLNISLIYVESFMQQVIEDMRLVTHIRSLFLSTRDYTIGCVPSQAQSRAKNSSSLLDVSTETLSSEVMPAYSHDTGKTMKSETLDMLLPFQCPGKNYSPPAVYQKMVVDVAEHERLEFKSDGCSILLQSLSNMMNTGPQNLVEMKSETEKMSGGNNSGCEDTCSEAENKFSSFLHNLVMENNSFNDLIHPPENVGVHSTSFPSEFLDAVYCESDKLCYVDINQNGVSNVPTSSDANSQEVTEKFQTEPCFKDTSYTLNFPAGCELREALGPGFLKGNKYFDWAAQINQDDKTVEMPDEISCSQMTSESHPEHLLEAMVTNVFHSNNDINSELSFSKSMQSAMASEKNHEASIHTVSTINSEGFSIDESSLVRVGKHRSLSSSGICGVLSPKGYSSACPSSCSEQFERSSEPAKSSKKRARPGESSRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLEYTIKHMLFLQSVTKYADKLNKFADSKPKLHHMETDIDGSSSYQQGSSWAMEVGGHLKIRSILVENLSKNGQMLVEMLCEECSHFLEIAEVIGSLGLTILKAATEALGEKTCICFVVEGQNNRNLHRLDILWPLVQLLQSKSTMHS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1011 774 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 3 153 IPR043561 GO:0003700|GO:0006355
Lal13g1011 774 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 183 773 IPR043561 GO:0003700|GO:0006355
Lal13g1011 774 MobiDBLite consensus disorder prediction 579 603 - -
Lal13g1011 774 MobiDBLite consensus disorder prediction 574 603 - -
Lal13g1011 774 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 152 IPR025610 -
Lal13g1011 774 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 589 638 IPR011598 GO:0046983
Lal13g1011 774 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 3 153 - -
Lal13g1011 774 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 183 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1011 Lal-Chr13 7422758 7434722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1011 3 770 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 38.868 2.45e-153 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1011 - - gmx:100777740 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0829 12 6688090 6695037 Lal13g1011 13 7422758 7434722 LSH
Lal12g0678 12 4976612 4981404 Lal13g1011 13 7422758 7434722 LSH
Lal13g1011 13 7422758 7434722 Lal24g0775 24 6016215 6024186 LSH