Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1009 ATGAACAACATGTGTAGGTGCACAAGGTCAAAGCACTTAAGTGTGCTTCTTTGGCTACAAATTTTGGTTATGAGTTTGTTGTTCATTGGGATAATACAATGCCAAGAAATGAATGATTATGAACAAATTAATAACCCTTCTGTTCTTCCCCTTATTACTCAAATTGTATATACTAGACTTTCCAATCTTACCTCACTTCTCAGTCAACAAATCAGTTCACAATCCACTTTCTGTGTCAAAGATCCGGATGCTGATTGGAATCAGGCATTTAATTTTTCATCTGATTTGGGCTTCTTGACTTCTTGCATTACCAAGACTAAAGGCATGGAAAGAAATTACACTCACCATTCTTCTGATGCTTTGGACTCTGCTGATTCTGATGATTTAACAGGAGATATTACGAAACGGTTGTGCACCGCGGCAGAAGTGAAGTTTTATTTAGATAGTTTATTAGAGAGATCTACAAGTGCCAGTTATCTAGAGCCTAACAAGAACTGCAATTTAACATCATGGGTCCCTGGTTGTGAGCCAGGATGGGCCTGTAGTGTTCACTCAGACCAGAATGTTGATCTTAGAAATTCGAAGGATATACCTGCAAGAACTTCAAACTGTCAACCATGTTGTGAAGGCTTCTTCTGTCCTCATGGTATCACGTGCATGATGCCTTGCCCTCTAGGTTCTTATTGTCCTATTGCTACACTCAATAAAACTACAGGCGTATGTGAACCATATCTTTATCAACTGCCTCCAATGCAGCCAAACCATACATGTGGTGGAGCAAATGTATGGGCTGATGTTAGTAACAGTGGTGAGATATTTTGCTCAGCAGGATCTTATTGTCCAACAACTACCAAAAGAATTCCATGCAGTAGTGGGCATTACTGCAGGACGGGTTCCACGTCTGAGAAAAGATGCTTCAAGTTGAGTTCATGTAATTCAAACACAGCATACCAGAATATCCATGCATATGGAATTATGCTCATTGCAGCATTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACAACTAGGGAAAGGAGAGTGACCAAATCTAGAGAGGCAGCAGCTAGAAGTGCAAGGAAGACCGCGAATGCACACCAGAGATGGAAAGCTGCAAAAGATGCTGCTAAGAAGGGTGCAACTGGGCTGCAAGCTCAACTATCACGCAAATTCTCGCTCAAAAAGGATGCAGAAAATCTGGATAAGTTTAAGATTTTGAATCAAGCAACTCCTGAAATAGATGTTGAATCGTTGCCACATGCACATCCTATTACTACTTCAAGCATGGCTGCAAGTTCATCTGCGGTGCTGGTACCAAAGGAAAAAGGAAAAGGGCCTAGTGGTTTGATGCAGATTATGCATGAAATTGAGAATGACCCTGAAATTAATGACAACTTTACTGTAGAAACAGAAAGTAGAGATAAGAAGGTTACAGGAAATGTGACAAAGGGAAAACAGATGAATACTCGGAGCCAAATGTTTAAGTATGCATATGCTCAACTTGAAAAAGAGAAGGCTCAGCAACAAGAGAACAAGAACCTTACCTTCTCTGGAGTAATTAAAATGGCTACCAACACAGATAAAAGGAAAAGGCCTTTAATTGAGATTTCTTTCAAGGATCTTACTCTTACATTGAAAGCTCAAAATAAACACATATTGAGATGTGTGACCGGGAAGATTAAACCCGGCCGCATCACAGCTGTCATGGGTCCATCAGGAGCTGGCAAGACAACATTTCTTTCATCTCTAGCTGGAAAGGCATTCGGGTGCTCGGTCACTGGCTCAATTCTTATAAATGACAGGAATGAATCAATCCACTCATTTAAGAAAATTATTGGCTTTGTGCCACAAGATGATATAGTTCATGGGAATCTGACAGTGGAAGAGAATCTCTGGTTCAGCGCACAATGCCGGCTATCAGCAGACTTGTCAAAACCAGATAGAGTTCTGGTTGTTGAGAGAGTTATTGAATTCTTGGGGCTTCAGTCTGTGAGGAATTCCTTGGTTGGAACCGTGGAAAACCGAGGGGTCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTCTGATCTTGGATGAACCTACGTCTGGTTTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTGCGACGTGAAGCTCTCGAGGGAGTGAACATTTGCATGGTAGTTCATCAACCCAGCTATGCTTTATTCCAGATGTTTGATGACTTGATACTTCTGGGAAAAGGCGGTCTCACCGTCTATCATGGATCCGCAATGAAAGTTGAAGAATACTTTTCAGGCCTAGGGATCAATATCCCGGAGCGGATTAACCCTCCAGATTACTTCATTGACATATTGGAAGGCATAATAGTACCTGGTGGAAACTCAGGGCTTAGTTATAAAGAGTTGCCAGTTAGATGGATGCTTCATAATGGATATCCAATACCTCATGATATGAGGCAGCATGCAGAACAATTTGATATGTCTCTAAGTGTAAATTCAGCTAATGAAACAGATCGTAATGGCCCGGGACATGATGAGAAAACCTTTGCTGGAGAATTATGGCAAGATGTGAGAAACAATGCAGAAGTGCGGAGGGAGAAGATACGGCTCAATTTTTTGACATCCAAGGATGTATCTAATCGGAAAACTCCTGGTCTATTCAAGCAATATAAGTACTTTCTCATACGGGTTGGGAAGCAGCGATTACGGGAAGCTAGGATACAAGCCATTGATTATCTGATTTTGTTACTTGCTGGAGCCTGCTTAGGATCGCTTACGAAATCAAGTGATCAAACATTTGGTGCAGCTGGGTACACCTATACAGTAATTGGTGTATCTCTTCTGTGCAAAATAGCGGCATTGAGATCATTTTCTTTGGATAAATTACTCTACTGGAGAGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTTCTTTCTAAAGACACAATTGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTCTCTATGTTCTATTTTTTCACCAATCCGAGATCTTCTTTCGCCGATAATTACATCGTGCTTCTCTGTCTTGTATACTGTGTGACCGGCATAGCATATGCACTGTCCATACTTTTTGAACCCGGGGCTGCCCAGCTGTGGTCAGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACAAATAGATAATAAAACTATGAAGGCTATAACTAATTTATGTTACTCCAAGTGGGCTTTACAAGCATTTGTAGTTGCAAATGCTGATAGATATCAAGGAGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAGAGTGGATATAATCTTCATGATTGGAATTTGTGCATATCTATCCTCATTCTCATGGGGGTAATTGCACGGGCAATAGCATTTTTCTGTATGGTTACTTTCCAGAAGAAATAA 3447 0.4102 MNNMCRCTRSKHLSVLLWLQILVMSLLFIGIIQCQEMNDYEQINNPSVLPLITQIVYTRLSNLTSLLSQQISSQSTFCVKDPDADWNQAFNFSSDLGFLTSCITKTKGMERNYTHHSSDALDSADSDDLTGDITKRLCTAAEVKFYLDSLLERSTSASYLEPNKNCNLTSWVPGCEPGWACSVHSDQNVDLRNSKDIPARTSNCQPCCEGFFCPHGITCMMPCPLGSYCPIATLNKTTGVCEPYLYQLPPMQPNHTCGGANVWADVSNSGEIFCSAGSYCPTTTKRIPCSSGHYCRTGSTSEKRCFKLSSCNSNTAYQNIHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVTKSREAAARSARKTANAHQRWKAAKDAAKKGATGLQAQLSRKFSLKKDAENLDKFKILNQATPEIDVESLPHAHPITTSSMAASSSAVLVPKEKGKGPSGLMQIMHEIENDPEINDNFTVETESRDKKVTGNVTKGKQMNTRSQMFKYAYAQLEKEKAQQQENKNLTFSGVIKMATNTDKRKRPLIEISFKDLTLTLKAQNKHILRCVTGKIKPGRITAVMGPSGAGKTTFLSSLAGKAFGCSVTGSILINDRNESIHSFKKIIGFVPQDDIVHGNLTVEENLWFSAQCRLSADLSKPDRVLVVERVIEFLGLQSVRNSLVGTVENRGVSGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFQMFDDLILLGKGGLTVYHGSAMKVEEYFSGLGINIPERINPPDYFIDILEGIIVPGGNSGLSYKELPVRWMLHNGYPIPHDMRQHAEQFDMSLSVNSANETDRNGPGHDEKTFAGELWQDVRNNAEVRREKIRLNFLTSKDVSNRKTPGLFKQYKYFLIRVGKQRLREARIQAIDYLILLLAGACLGSLTKSSDQTFGAAGYTYTVIGVSLLCKIAALRSFSLDKLLYWRESDSGMSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSSFADNYIVLLCLVYCVTGIAYALSILFEPGAAQLWSVLLPVVLTLIATQQIDNKTMKAITNLCYSKWALQAFVVANADRYQGVWLITRCGSLLKSGYNLHDWNLCISILILMGVIARAIAFFCMVTFQKK 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1009 1148 Gene3D - 539 775 IPR027417 -
Lal13g1009 1148 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 117 1145 - -
Lal13g1009 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 541 770 IPR027417 -
Lal13g1009 1148 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 541 782 IPR003439 GO:0005524
Lal13g1009 1148 CDD ABCG_EPDR 539 765 - -
Lal13g1009 1148 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 117 1145 - -
Lal13g1009 1148 ProSitePatterns ABC transporters family signature. 682 696 IPR017871 GO:0005524
Lal13g1009 1148 Pfam ABC transporter 560 710 IPR003439 GO:0005524
Lal13g1009 1148 SMART AAA_5 567 759 IPR003593 -
Lal13g1009 1148 Pfam ABC-2 type transporter 739 1148 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1009 Lal-Chr13 7408439 7416085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1009 565 760 Calmodulin-binding Proteins AT2G36910 25.116 2.01e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1009 - - lang:109341040 1990.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0827 12 6656068 6664978 Lal13g1009 13 7408439 7416085 ECH
Lal20g0100 20 645933 650082 Lal13g1009 13 7408439 7416085 ECH
Lal13g1009 13 7408439 7416085 Lal13g1009 13 7408439 7416085 ECH
Lal12g0827 12 6656068 6664978 Lal13g1009 13 7408439 7416085 LSH