Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1008 ATGGTCCATATGGCAACAAATGGCATGGACCCCGATGTTGTTCGATGGGGTCTTCATCTTCTAGATGGTTGCACTCATACGAGTAGTGGTCCACCTAGTATCATAACTCAATATGATCGAGATTTTAGTCAAATTCAATATGTTACAGAAGGCTTCTGTCAGCCCACTTACGTGGAGAATGACGAGGCTCTTGCACGTGCTTATCAAGAAGAATTATCACAACTTGATTCTATGAAGACTTCTGAAAAATCCAATTTTGAGAATGAGCACCTGCGAGAATCTGTTCTTGCCCAAGATTGGATTTCTTCAAATAGAAGCTATAACTATGATTGTCAACAACATGTAGGCAATGACTCTTTCCGGAACACCATGGATGAGCCAAACGATATGAAAGAAACGGAGAACTATGTTCCGAGTGAAAGGGACAACAATGTTCATGAAATTGGAGTTTCTGGGTCGTTGTCTGATGCAGGAGAGATACCTGTTACCTGTGATGACTTTTGGCGTTTGTTGGAAATATCAGACGAATCTGCTATTGATGGTGAAGTAGGCAAAAGACTGAACCAGATGATCCCGATTCCTCATATTCCTAAAACCAATGAAAAAATACCATCTTATGACGAAGAAATATCAGATCATCAAAGGCTGCTAGACAGATTGCAGTTATATGATGTGATTGAGCGTAAGGTTGAAGGAGATGGTAGCTGCCAGTTTCGTTCTTTGTCAGATCAACTCTATCGCTCTCAGGGTCATCACAAGTTTGTGCGGGAACAAATTATTCAACAGCTCAAGTGTTTCCCAGAACTATATTCTGGTTATGTTCCTATGGCTTATGGTGATTATTTGAAGAAGATGAGCAAGAGCGGCGAATGGGGCGACCACGTTACGTTGCAGGCTGCTGCAGATTGGTATGGTGTCAAAATTTTTGTTATCACATCCTTTAAGGACACATGTTACATCGAGATTCTTCCACAGATGCAGAAGTCTGAACGAGTGATATTTCTGAGCTTTTGGGCAGAGGTGCATTACAACCCAATCTACCCAGAAGGAGGTAACAATTACCATCTTCACCGCATACAAGGAAAAAGAAGAAATGGTGGAATATCGGCTGCTAGGATCGGTGCACAATGGAGGCAACTATTTCATGCTTCAATTGTGGAAGAATCTGTTCTTCAGTGA 1179 0.4165 MVHMATNGMDPDVVRWGLHLLDGCTHTSSGPPSIITQYDRDFSQIQYVTEGFCQPTYVENDEALARAYQEELSQLDSMKTSEKSNFENEHLRESVLAQDWISSNRSYNYDCQQHVGNDSFRNTMDEPNDMKETENYVPSERDNNVHEIGVSGSLSDAGEIPVTCDDFWRLLEISDESAIDGEVGKRLNQMIPIPHIPKTNEKIPSYDEEISDHQRLLDRLQLYDVIERKVEGDGSCQFRSLSDQLYRSQGHHKFVREQIIQQLKCFPELYSGYVPMAYGDYLKKMSKSGEWGDHVTLQAAADWYGVKIFVITSFKDTCYIEILPQMQKSERVIFLSFWAEVHYNPIYPEGGNNYHLHRIQGKRRNGGISAARIGAQWRQLFHASIVEESVLQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1008 392 ProSiteProfiles OTU domain profile. 225 349 IPR003323 -
Lal13g1008 392 SUPERFAMILY Cysteine proteinases 187 348 IPR038765 -
Lal13g1008 392 PANTHER OTU-LIKE CYSTEINE PROTEASE DOMAIN CONTAINING PROTEIN 25 353 - -
Lal13g1008 392 Coils Coil 58 78 - -
Lal13g1008 392 MobiDBLite consensus disorder prediction 118 137 - -
Lal13g1008 392 Gene3D - 207 353 - -
Lal13g1008 392 Pfam OTU-like cysteine protease 232 318 IPR003323 -
Lal13g1008 392 PANTHER OTU DOMAIN CONTAINING PROTEIN 25 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1008 Lal-Chr13 7393013 7398250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1008 - - gmx:100820379 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1485 13 14352356 14357508 Lal13g1008 13 7393013 7398250 ECH
Lal13g1008 13 7393013 7398250 Lal13g1008 13 7393013 7398250 ECH
Lal13g1008 13 7393013 7398250 Lal24g0773 24 6002288 6007244 LSH
Lal13g1581 13 15651833 15652786 Lal13g1008 13 7393013 7398250 PCT