Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1006 ATGAAGAATTCTATCTCAGAAAACAGTATTTACATTGAGAGTGATGAAGAAGATGATGAGAAAGATTTGAACAAGGGTGGAGATGATGGTCATGATTCTGATTCTTCCAATTACTCAAATGAAAACCCCCCACAGAGAAAACCAAGTTCCTATAACATTTCATGGCCTCAGAGTTACAGGCAGTCTATTGATCTATACAGCAGTGTACCATCACCAAATATTGGATTCCTTGGAACTCCTTCATTGTCAAGATTAAGCAGTTCATTTCTTTCCACATCTCTAACAAGAAGGCACACTCCTGAGGCAATTTCTTCAGTAACAAAACCTCTGATACAACCAACTGAAGAAGAACAACACAGACGTAGCTCTCATACCTTGCTTCCTCCTCTTCCTAGAAGGTCTTCTTCCCTTAGGAAGGGCTCTAAGGTCTCTCATGAAGTCCCTATTTCTCGCCATTGCTCTTTTGGACAAGCTGTGCTTAATGGCATAAATTGTCTTTGTGGTGTAGGAATCCTTTCTACCCCTTATGCTGCCCAACAAGGTGGATGGGTTGGCCTTTCTGTGTTATTTATCTTTGCACTAATTTCCTTTTACACTGGAATGCTCTTACGGTCTTGTTTGGATAGTGAACCTGGTATTGAGACATACCCTGATATTGGTCAAGCTGCATTTGGTACTACTGGACGTATTGCCATTTCTGCTTGTTGCATTGAATATATAATTTTGGAGGGTGACAATTTGTCTTCCTTGTTTCCAAATGCATACTTAAATTTGGGTGGAATTGAGTTGAATTCTCATACCCTCTTTGCATTGATTGCAACCTTGGCTGTTCTTCCCACCGTTTGGCTTCGCGATCTAAGCATTCTCAGTTACATCTCAGCTGGTGGAGTTATTGCATCAATTTTAGTTGTTATCTGCTTATTCTGGGTTGGTGTAGAAGATGTTGGCTTTCATAGCAAAGGGACAACAATCAATCTTACAACTTTTCCTGTTGCTGTGGGTCTCTATGGTTACTGCTATTCTGGACATGCTGTCTTCCCAAACATTTATACATCCATGGCAAATCCAAACCAATTCCCTGCAGTGCTCTTAGCATGTTTTGGTATTTGTACCCTCTTGTATGCTGGAGCTGCTGTAATGGGATACACAATGTTTGGAGAAGCTATACTCTCTCAGTTTACTCTTAACATGCCCCAAGACTTGGTTGCCAGCAAGATTGCTGTTTGGACTACGAACTGGCCTGGTAGTTTCTACCTTGATCATTGGTCTATCCGTTCCGTTTTTTGGTCTTTTGATGTCATTGATAGGATCATTGCTCACAATGCTTGTTACTTTGATACTTCCTTGTGCTTGTTTCCTAAGAATCTTGAGGGGGAAAGTCACACAGTTACAGGTATGATGATAGCACTCTTCATAGTACTACTTAATGCAGTACTTTGTATTACAATCATCACAGTAGGTTCTGTATCGGCTGTTTTCGGAACATACTCGGCGCTCTCTGAGATTGTCAAGAGTTTGAGTGGATGA 1527 0.4093 MKNSISENSIYIESDEEDDEKDLNKGGDDGHDSDSSNYSNENPPQRKPSSYNISWPQSYRQSIDLYSSVPSPNIGFLGTPSLSRLSSSFLSTSLTRRHTPEAISSVTKPLIQPTEEEQHRRSSHTLLPPLPRRSSSLRKGSKVSHEVPISRHCSFGQAVLNGINCLCGVGILSTPYAAQQGGWVGLSVLFIFALISFYTGMLLRSCLDSEPGIETYPDIGQAAFGTTGRIAISACCIEYIILEGDNLSSLFPNAYLNLGGIELNSHTLFALIATLAVLPTVWLRDLSILSYISAGGVIASILVVICLFWVGVEDVGFHSKGTTINLTTFPVAVGLYGYCYSGHAVFPNIYTSMANPNQFPAVLLACFGICTLLYAGAAVMGYTMFGEAILSQFTLNMPQDLVASKIAVWTTNWPGSFYLDHWSIRSVFWSFDVIDRIIAHNACYFDTSLCLFPKNLEGESHTVTGMMIALFIVLLNAVLCITIITVGSVSAVFGTYSALSEIVKSLSG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1006 508 MobiDBLite consensus disorder prediction 100 143 - -
Lal13g1006 508 PANTHER - 26 419 - -
Lal13g1006 508 MobiDBLite consensus disorder prediction 1 53 - -
Lal13g1006 508 MobiDBLite consensus disorder prediction 36 53 - -
Lal13g1006 508 Pfam Transmembrane amino acid transporter protein 153 407 IPR013057 -
Lal13g1006 508 PANTHER OS05G0424000 PROTEIN-RELATED 26 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1006 Lal-Chr13 7376011 7383258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1006 1 411 Amino Acid or Auxin Permease AAAP Family AT2G39130 67.213 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1006 K15015 - gmx:100775840 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1006 13 7376011 7383258 Lal13g1006 13 7376011 7383258 ECH
Lal13g1006 13 7376011 7383258 Lal24g0770 24 5977449 5984593 LSH