Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0969 AGAGGTGGTTCTAGTTCAAAGAAGAGGAACTATCATCGTCATACTCCAAGCCAGATTCAAAGGCTTGAATCAATATTCAAGGAGTACCCACATCCAGATGAAAAACGGAGGATGCAATTAAGCAGAGAACTAGGCATTACGCCTACACAGGTTAAGTTTTGGTTTCAGAATCATAGGAACCAAATGAAGGTTCAGCAAGAAAGACTTGATATCTTCACGCTAAGGAGTAATAATGAGAAGTTACGAAGTGAGAACATTGCTTTAAGGGAGGCATTGAAAAAATGCATATGCCCTAACTGTGGTCCAGTTACTGTTGATGGAGATTCTTTGTTGAATGTGCAAAGGATGAGATTAGAGAATCTCCAACTCAAAGAAGAGCTTGATAAGATATCCAACATTGCAGCTATGTACACCGGAAAACCATGGGGATAA 432 0.3981 RGGSSSKKRNYHRHTPSQIQRLESIFKEYPHPDEKRRMQLSRELGITPTQVKFWFQNHRNQMKVQQERLDIFTLRSNNEKLRSENIALREALKKCICPNCGPVTVDGDSLLNVQRMRLENLQLKEELDKISNIAAMYTGKPWG 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0969 143 Pfam Homeodomain 8 63 IPR001356 GO:0003677
Lal13g0969 143 PRINTS Lambda-repressor HTH signature 36 45 IPR000047 GO:0003677
Lal13g0969 143 PRINTS Lambda-repressor HTH signature 45 61 IPR000047 GO:0003677
Lal13g0969 143 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 141 - -
Lal13g0969 143 CDD homeodomain 8 66 IPR001356 GO:0003677
Lal13g0969 143 ProSiteProfiles 'Homeobox' domain profile. 5 65 IPR001356 GO:0003677
Lal13g0969 143 SUPERFAMILY Homeodomain-like 4 66 IPR009057 -
Lal13g0969 143 Gene3D - 2 73 - -
Lal13g0969 143 ProSitePatterns 'Homeobox' domain signature. 40 63 IPR017970 GO:0000981|GO:0006355
Lal13g0969 143 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 141 IPR042160 -
Lal13g0969 143 Coils Coil 113 133 - -
Lal13g0969 143 SMART HOX_1 7 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0969 Lal-Chr13 6974914 6975857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0969 7 141 Homeobox Transcription Factor Family AT1G73360 60.000 1.71e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal13g0969 Homeodomain 2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0969 K09338 - lang:109335474 264.233