Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0963 ATGAAAAGGGAAGATCAAGGACAGTGTTCTTCTCAGTCTCTCAATAATTTCCAGACTTATCAAGAACAATTACTCTTTCAGCAACAGTTGATGCAGCAACAAGACTTAAGTGGAGTATCTCCTATATTTCAACCATGGTCTATGCCACAGGTTCAACATGACCCTTATTTTGTCCCTCCCAAAAGTTTTCATTCACCCTATTCAAGCTATTTCAACAGAAGGGTTCCTTCTCTTCAGTTTCCATATGAGGGTTGTCCTTCTTCTGAAGAACTTAGGATATTGTCAGAAACCCTAAGTGTTCATCAACATGGTTCAGCAGCACCCTTTGGGCTCCAAGCTGAGCTTGGAAAGATGAGTGTTGAACAAATTATGGAGGCTAAGGCTCTTGCACAATCTAAGAGTCACAGTGAAGCTGAAAGGAGGCGCAGAGAGAGAATCAATAACCATCTTTCTAAACTGAGAAGCTTGTTACCTAGCACAACCAAATCTCTCTATATGGTAGCTTTTAGGAGAGCTCTGTTCAGCAACAAAGGAAATGGAAAGGGTAACAAACAGGAGATTAAAGGGACAGATAAAGCATCATTGTTAGCAGAAGTGATTCAACATGTAAAGGAACTAAAGCGTCAAACATCATTAATAGCAGAAACAAGTCCACTTCCCACAGAATCCGATGAGTTAACAGTGGACATAACTGATAATGAAGATGGAAAGTTTGTGATCAAAGCTTCACTTTGCTGTGAGGATAGAATAAATCTTTTGCCTGAACTCATCAATGCATTGAAAGTATTAAGGTTAAGAACATTCAAAGCTGAGATCACAACACTTGGTGGGCGCGTGAAGAATGTGTTGTTCATCACTGGTGAAGAAGATTCAAGGTGCAATAGTGAAGAACATAGCTATAATCAGCAACATTATTGTATTAGTTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAAAGTGTTGGAGATAATGAGTCTGCTTCTGCAATTGTCAAGAGACAAAGGACTAATACAATAACAATATCCTAG 1032 0.3915 MKREDQGQCSSQSLNNFQTYQEQLLFQQQLMQQQDLSGVSPIFQPWSMPQVQHDPYFVPPKSFHSPYSSYFNRRVPSLQFPYEGCPSSEELRILSETLSVHQHGSAAPFGLQAELGKMSVEQIMEAKALAQSKSHSEAERRRRERINNHLSKLRSLLPSTTKSLYMVAFRRALFSNKGNGKGNKQEIKGTDKASLLAEVIQHVKELKRQTSLIAETSPLPTESDELTVDITDNEDGKFVIKASLCCEDRINLLPELINALKVLRLRTFKAEITTLGGRVKNVLFITGEEDSRCNSEEHSYNQQHYCISSIQEALKAVMEKSVGDNESASAIVKRQRTNTITIS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0963 343 PANTHER TRANSCRIPTION FACTOR BHLH30 45 162 IPR045847 GO:0003700|GO:0006355
Lal13g0963 343 PANTHER TRANSCRIPTION FACTOR BHLH30 190 342 IPR045847 GO:0003700|GO:0006355
Lal13g0963 343 PANTHER TRANSCRIPTION FACTOR BHLH30 45 162 - -
Lal13g0963 343 PANTHER TRANSCRIPTION FACTOR BHLH30 190 342 - -
Lal13g0963 343 SMART finulus 136 212 IPR011598 GO:0046983
Lal13g0963 343 Gene3D - 124 213 IPR036638 GO:0046983
Lal13g0963 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 206 IPR011598 GO:0046983
Lal13g0963 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 213 IPR036638 GO:0046983
Lal13g0963 343 Pfam Helix-loop-helix DNA-binding domain 133 206 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0963 Lal-Chr13 6860419 6863290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0963 10 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 49.100 6.30e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0963 HLH 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0963 - - pvu:PHAVU_007G101900g 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0816 12 6460931 6463939 Lal13g0963 13 6860419 6863290 LSH