Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0961 ATGAGTTGGAAAAGAGTGGCTCAATCTTTTCAAGCTCTCATAGCTCATGCCTTGCTCTTTTCCTTCACTCTTATCCTTTCTCTAAAGCTTGACCATCTTCTCCCTTATACATGGACATGGTGGGTTGTATTTTCTCCTCTTTGGCTTTTCCATGCTGTAGTAGCTCGATGCAGGTTTTCCATGCCTGCTCCGTCGATGCCTCATGGTCGCCAATGGGCTCCTTCTCATTCAGTCGTAGCGACTCCATTACTTGTCGCATTTGAGCTACTTCTCTGTATGCATCTTGGCAGCAGTTACGCGGTGAATTTAAAGATCGTCTTCTTACCCCTAATAGTTTTTGAAGTGGTTGTTTTGATTGATAACATCAGGATGTGTAGAACTTTGATGCCTGGAGATGATGAAAATTTGACTGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGGTTTCAATAGCCATGGTCTTCTTTATTGCTGGTACAACATTCACCCTTCTTAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGGCATTGCACAGTGCTTTGCATTTCTTGTTTGTACAAAGTGGCACAATCCAACAATTCATGGAAACAACATCATTACAGAACCATGTTCGTCATCTTCAAGTACCGTTAGATACACGGAATGGAGTAGTAGAGGCTTTCTTGTTTCCTCAGATGAAGATAGGCAGCAAAATGGGTGCTGCAATCTGCAGGACATTGGAGGGCATTTTATGAAAATTCCAATCATTTGTTTCCAGTTACTTCTTTTTATGCATATAGCGGGAACACCATCAGATGCGAAATATATGCAACACCGGATCATATTTTCCCCGCTTCTTTTGTTGCAAGGAGCTGGGGTCCTATTTGCAGCATATAGATTAATAGAGAAGATAGTTCTTTTGCTGTACAATGGAGATGTTTCTAGAACATACACATCTATAGCATCAAAATCCCTTGATTGCTTTGGGTTCTTTCGTCATGGCTCAAGGTTGCTTGGTTGGTGGTCAATAGATGAAAGAAGTAGAGAGGAAGAAGCTAGGCTTTATTGTGCTGGGAGTTCCGGGTATGATACTTTCTCCCCTGATACAGTGAAGAAAATGCCTAGAGCAGATCTCGTTGACGAGATTTGGAGACTACAAGCTGCATTAAGTGAGCAGACAGAAGTTACAGAGTATAGCGCGGAGGCATATGAAAGACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTTGAAGAGCAGATTAATGTGGTTCTGCTTCCTTGTAGGCATCACATTATTTGCAGTAGTTGCAGCGAAAAATGTAAAAGGTGCCCTGTCTGCCGTGTCGTGATCGAGGAACCGCTGCTTGTATATGATATGTAG 1392 0.4203 MSWKRVAQSFQALIAHALLFSFTLILSLKLDHLLPYTWTWWVVFSPLWLFHAVVARCRFSMPAPSMPHGRQWAPSHSVVATPLLVAFELLLCMHLGSSYAVNLKIVFLPLIVFEVVVLIDNIRMCRTLMPGDDENLTDEAVWETLPHFWVSIAMVFFIAGTTFTLLKICGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGNNIITEPCSSSSSTVRYTEWSSRGFLVSSDEDRQQNGCCNLQDIGGHFMKIPIICFQLLLFMHIAGTPSDAKYMQHRIIFSPLLLLQGAGVLFAAYRLIEKIVLLLYNGDVSRTYTSIASKSLDCFGFFRHGSRLLGWWSIDERSREEEARLYCAGSSGYDTFSPDTVKKMPRADLVDEIWRLQAALSEQTEVTEYSAEAYERLQNEKILCRVCFEEQINVVLLPCRHHIICSSCSEKCKRCPVCRVVIEEPLLVYDM 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0961 463 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 462 - -
Lal13g0961 463 SUPERFAMILY RING/U-box 406 457 - -
Lal13g0961 463 Pfam Zinc finger, C3HC4 type (RING finger) 414 455 - -
Lal13g0961 463 SMART ring_2 416 450 IPR001841 -
Lal13g0961 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 461 IPR013083 -
Lal13g0961 463 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 462 - -
Lal13g0961 463 ProSiteProfiles Zinc finger RING-type profile. 416 451 IPR001841 -
Lal13g0961 463 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0961 Lal-Chr13 6851713 6858091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0961 5 463 C3H Transcription Factor Family AT1G73950 60.814 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0961 - - gmx:113000756 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0815 12 6449569 6456953 Lal13g0961 13 6851713 6858091 LSH