Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0958 ATGGATGGAGTTAGTTGCACTGACGAAACCACAACAACCAGCGACTCACTTTCTATATCTCTTCCATCGAAGCTATCTTCGCGACAACCGCCAAACACGCTAAGCCGTGTCGGAAGCGGAGCCAGCACCGTCGTCGATCCTGACGGCGTTTTCTGCGGCGGTGCAGAAGCGGAGTCCCGTAAACTTCCTTCGTCTAAATACAAAGGCGTGGTGCCACAGCCTAACGGACGTTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGAACATTTAACGGTGAAGATGAAGCCGCCAGAGCCTACGACATCGCCGCCGTTAGATTCCGCGGAAAGGACGCTGTAACGAACCGTAAGACGTTCGCAAGTGACGGTTCCGGCAACGTGGAAATCGAGTTCATGAACTCGCATTCCAAGTCTGAGATCGTCGACATGCTCCGAAAGCACACCTACCACGAAGAGTTACAACAGAACAAGAACAACACGTACGGGAAGCAGCGGCAACACCACGAAAGCTCAGCAGCGACGCCGTTTGGGATTCCAGGCGCGTCTGAGACGAAAGCGCGTGAGACTCTGTTCGAGAAAACGGTTACGCCGAGTGACGTCGGGAAGTTGAATCGATTAGTTATACCGAAACAGCATGCGGAGAAGCACTTCCCGTTAGGCGACGGAAGCTCGCCGTCGACGGCGGCGGCGAAGGGAATGCTTTTGAATTTTGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCATATTGGAACAGTAGCCAGAGCTACGTGTTAACCAAAGGGTGGAGCCGGTTCGTTAAAGAGAAGAACCTAAAAGCCAGTGACGCGGTTCAGTTTTACCGGTCCACTGGACCGGACCGGAAGCTCTACATTGGAAGTAAGAAAAGGAGTGATGAGGTTGGTGCTAATGCTGTTGAGTTGAATATTCCGGTTCGACCGGTGGTTGAACCGGTTCATATGGTTCGGCTTTTTGGGGTCAACCTTTTAAATCTTCCTGATTCTGATGCTATTGGTGGTAACTGCAATGGAAAGAGGAAAGAGATGGAACTATTTGCTTTAGAATGGAGCAAAAAGCAAAAAATAATTGGAGCTTTGTAA 1116 0.5116 MDGVSCTDETTTTSDSLSISLPSKLSSRQPPNTLSRVGSGASTVVDPDGVFCGGAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNGEDEAARAYDIAAVRFRGKDAVTNRKTFASDGSGNVEIEFMNSHSKSEIVDMLRKHTYHEELQQNKNNTYGKQRQHHESSAATPFGIPGASETKARETLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGDGSSPSTAAAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKASDAVQFYRSTGPDRKLYIGSKKRSDEVGANAVELNIPVRPVVEPVHMVRLFGVNLLNLPDSDAIGGNCNGKRKEMELFALEWSKKQKIIGAL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0958 371 MobiDBLite consensus disorder prediction 1 40 - -
Lal13g0958 371 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 371 - -
Lal13g0958 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 371 IPR044800 GO:0003700
Lal13g0958 371 SMART B3_2 195 301 IPR003340 GO:0003677
Lal13g0958 371 MobiDBLite consensus disorder prediction 164 183 - -
Lal13g0958 371 Gene3D - 184 310 IPR015300 -
Lal13g0958 371 SUPERFAMILY DNA-binding domain 65 119 IPR016177 GO:0003677
Lal13g0958 371 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Lal13g0958 371 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Lal13g0958 371 ProSiteProfiles B3 DNA-binding domain profile. 195 303 IPR003340 GO:0003677
Lal13g0958 371 CDD AP2 65 119 IPR001471 GO:0003700|GO:0006355
Lal13g0958 371 MobiDBLite consensus disorder prediction 1 41 - -
Lal13g0958 371 CDD B3_DNA 194 297 IPR003340 GO:0003677
Lal13g0958 371 SUPERFAMILY DNA-binding pseudobarrel domain 193 291 IPR015300 -
Lal13g0958 371 ProSiteProfiles AP2/ERF domain profile. 66 121 IPR001471 GO:0003700|GO:0006355
Lal13g0958 371 SMART rav1_2 66 127 IPR001471 GO:0003700|GO:0006355
Lal13g0958 371 Pfam B3 DNA binding domain 195 298 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0958 Lal-Chr13 6799801 6800916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0958 5 371 B3 DNA Binding Superfamily AT1G25560 57.841 1.32e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lal13g0958 B3 2.2e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0958 K09287 - gmx:100801107 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0814 12 6438822 6439856 Lal13g0958 13 6799801 6800916 LSH