Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0957 ATGGATTTCACTGAGAAAATCCATCGCCTCAAGATGGGGTTTCGTGACTATATCCAAGCATTAGAACAAGAACGTTGTAAGGTTCAGGTTTTCTCTAAAGAGCTTCCTCTTTCTTTGGACCTGATCACACAAGCCATTGAAGCTTGTAGGCAACAGTTGTCAGGAACAACAACAGAGTATAATTTGAATGTGCAATCTGAGTGTTCAGAACAGGCAACATCAATGGAAGGTCCTGTTTTGGAGGAGTTCATACCAATTAAGAAGAGGGCATCCCTTGATTGTGATGATGAGGATGAACAACATTCACACAAGTCCAAGGTTTCAAAGGACAACAACAAGAACAACACTGATAAGAGAAAATCAGATTGGCTTAGATCTGTTCAGTTATGGAATCCAAATCCCCTAGCTGAAGAGGATGTGAGTAGAGAAGTGTCTGTGATGGAAGTAAAGAGAAGTGGAAGTGGTGGTGCTTTCCACCCATTCCACAAAGAGGAGAAAGCTTGCAAGACTATTGAATCGTTATGTAAAGCACCCTCTTTAATGCCGGTAGTTGCAGCAAGTTCTACAGCGGTGACAGTCGTCAAGGACAATGCTGAAAGCAGCAAAAGAGAAGAGAAAGACGGGGACAGAAAGCAGCGCCGATGCTGGTCACCGGCATTGCATAAGAGCTTCTTGCAGGCCCTCCAGCAGCTTGGTGGTGCAGATTCTGCCACACCAAAGCAAATCAGAGACATAATGAAAGTTGATGGCCTAACAAATGATGAAGTGAAAAGCCATTTACAGAAATACCGTTTGCACACTAGAAGACCAAGTCCCATGAATCACAACAATGGCAATCCACAGGCTGCACCTTTTGTCCTTGTCGGCAACATTTTTGTTCAACAACATGAGTACACAGCTGTAGCTACCTCAACAGCATCAACGAATCTGACCACCGTTGCGACACCTACCAGAATGCATGCACCACTGGCCTCAAATTCTCCGACTCTTTCGCATGCACTACCTGCTTCGATTAAGAAGCCCCGGGTTAAGAACGTAGAGCCATATAAGTTTTCACACTCAGAAGAAAGGGCTAATCAAAGTGAAGGGGCTGTTCATTCAAACTCCCCTGCCTCATCATCCTCCACACATACCACCACAACTTCCCCTGGCTATTGA 1158 0.4482 MDFTEKIHRLKMGFRDYIQALEQERCKVQVFSKELPLSLDLITQAIEACRQQLSGTTTEYNLNVQSECSEQATSMEGPVLEEFIPIKKRASLDCDDEDEQHSHKSKVSKDNNKNNTDKRKSDWLRSVQLWNPNPLAEEDVSREVSVMEVKRSGSGGAFHPFHKEEKACKTIESLCKAPSLMPVVAASSTAVTVVKDNAESSKREEKDGDRKQRRCWSPALHKSFLQALQQLGGADSATPKQIRDIMKVDGLTNDEVKSHLQKYRLHTRRPSPMNHNNGNPQAAPFVLVGNIFVQQHEYTAVATSTASTNLTTVATPTRMHAPLASNSPTLSHALPASIKKPRVKNVEPYKFSHSEERANQSEGAVHSNSPASSSSTHTTTTSPGY 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0957 385 MobiDBLite consensus disorder prediction 343 360 - -
Lal13g0957 385 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Lal13g0957 385 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 381 - -
Lal13g0957 385 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Lal13g0957 385 MobiDBLite consensus disorder prediction 94 120 - -
Lal13g0957 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Lal13g0957 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 381 IPR044787 GO:0003700|GO:0006355
Lal13g0957 385 MobiDBLite consensus disorder prediction 320 385 - -
Lal13g0957 385 MobiDBLite consensus disorder prediction 197 215 - -
Lal13g0957 385 MobiDBLite consensus disorder prediction 361 385 - -
Lal13g0957 385 Gene3D - 210 268 - -
Lal13g0957 385 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0957 Lal-Chr13 6780959 6783504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0957 1 293 G2-like Transcription Factor Family AT1G68670 49.839 4.31e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal13g0957 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0957 13 6780959 6783504 Lal24g0746 24 5601598 5603934 LSH