Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal13g0954 | ATGGAAGTTCTGTCTGTTCCAGTCACTTTCACCAAATGTCAAAACTTTTCCTTTGTCAAACAAAAAACAACCCAAATTCAAGTCCTTTCAATAAGCATAACAAAACTACCCAACAATTACAATCAGAAATTTTCTTCTTCTTATTATTATTCTTCTTCGTATTCTTCCAATTTTTCATGTAATGATTGGTCATTAGCAGCAATAACATACCCTTCCTTACCCACTTCTTCAACTTCCACAACACAGAACCGCCATTGGATGGTGCTCATGGAGAATCCTCCTCATGGGGTCCATGAGAAGCCACAAGTCATTGATTATTATGTGAAGACTCTACAGAAACTTCTTGGAAGTGAGATAGATGCTCAAATGTGTATATATGATGCTTCCTGGGAAACACACTTTGGTTTTTGTTGTGACATTGATGAAGATATATCATCCCAGCTGGCCAGTCTACCTGGGGTCTTATTGGTTAGGCCTGATTCGGATTTCAACTCTCTGAAAAAAGACTATAGTTTATCAAATGTACAGGCAGCTTTCTCATCAAAACTGCAAACTGAAACCAATTTTTTGTTCCCTGCTGGGAGTTCGAAGCACTGGCTTGTCAGAATGGACAAACCTGGGGTTGGGGTTGTTACAAAGGCTCAAATTGTCGATCATTATGCTCAAATACTGACCAAAGTCATGGGGAACGAGACGGATGCACAAATGTGCATATATCATGTTTCCTGGAAAACCAACTTTGGCTTTTCTTGTGAACTTGATGAGGATTGTGCACAGGCGCTATCTGGTGTGCCTGGTGTCTTATCAGTTCAGCCAGATAATAATTTTGAGTCAGAAACTAAGGATTATCGAGGTAGTAACTTAGAAAATAGTTTGGTGAATTCTGATGAAGGAAACCAAGCAGTTCCTTTGAAAACAAAGAAGCTTTTTGTGACAGGTCTATCATTTTATACATCAGAGAAAACCTTACGTGCAGCATTTGAAGGCTTCGGTGAGCTTGTACACGTTAAGGTAATTATGGATAAGATTTCGAAAAGGTCCAAGGGTTATGCATTTGTTGAATATACTACAGAGGAGGCTGCAAGTGCAGCTCTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTGGTAGATGTTGCCAAGACTAACCCACCCAGCAACCGGATTCGTGGCAAACCGTCAGCTTGA | 1197 | 0.3985 | MEVLSVPVTFTKCQNFSFVKQKTTQIQVLSISITKLPNNYNQKFSSSYYYSSSYSSNFSCNDWSLAAITYPSLPTSSTSTTQNRHWMVLMENPPHGVHEKPQVIDYYVKTLQKLLGSEIDAQMCIYDASWETHFGFCCDIDEDISSQLASLPGVLLVRPDSDFNSLKKDYSLSNVQAAFSSKLQTETNFLFPAGSSKHWLVRMDKPGVGVVTKAQIVDHYAQILTKVMGNETDAQMCIYHVSWKTNFGFSCELDEDCAQALSGVPGVLSVQPDNNFESETKDYRGSNLENSLVNSDEGNQAVPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVHVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPSNRIRGKPSA | 398 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal13g0954 | 398 | PANTHER | ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC | 25 | 390 | - | - | |
Lal13g0954 | 398 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 309 | 375 | IPR000504 | GO:0003723 | |
Lal13g0954 | 398 | SUPERFAMILY | RNA-binding domain, RBD | 300 | 394 | IPR035979 | GO:0003676 | |
Lal13g0954 | 398 | SMART | rrm1_1 | 308 | 381 | IPR000504 | GO:0003723 | |
Lal13g0954 | 398 | Gene3D | - | 277 | 398 | IPR012677 | - | |
Lal13g0954 | 398 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 307 | 385 | IPR000504 | GO:0003723 | |
Lal13g0954 | 398 | PANTHER | MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED | 25 | 390 | IPR039206 | GO:0016554 | |
Lal13g0954 | 398 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 72 | 164 | IPR037045 | - | |
Lal13g0954 | 398 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 191 | 276 | IPR037045 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal13g0954 | Lal-Chr13 | 6744707 | 6748581 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal13g0954 | 284 | 387 | C2H2 Transcription Factor Family | AT2G19380 | 31.731 | 1.22e-11 | 64.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal13g0954 | - | - | gmx:100791652 | 565.844 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal13g0954 | 13 | 6744707 | 6748581 | Lal13g0954 | 13 | 6744707 | 6748581 | ECH | |
Lal12g0726 | 12 | 5503658 | 5506839 | Lal13g0954 | 13 | 6744707 | 6748581 | LSH | |
Lal13g0954 | 13 | 6744707 | 6748581 | Lal24g0649 | 24 | 4788767 | 4791866 | LSH |