Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0954 ATGGAAGTTCTGTCTGTTCCAGTCACTTTCACCAAATGTCAAAACTTTTCCTTTGTCAAACAAAAAACAACCCAAATTCAAGTCCTTTCAATAAGCATAACAAAACTACCCAACAATTACAATCAGAAATTTTCTTCTTCTTATTATTATTCTTCTTCGTATTCTTCCAATTTTTCATGTAATGATTGGTCATTAGCAGCAATAACATACCCTTCCTTACCCACTTCTTCAACTTCCACAACACAGAACCGCCATTGGATGGTGCTCATGGAGAATCCTCCTCATGGGGTCCATGAGAAGCCACAAGTCATTGATTATTATGTGAAGACTCTACAGAAACTTCTTGGAAGTGAGATAGATGCTCAAATGTGTATATATGATGCTTCCTGGGAAACACACTTTGGTTTTTGTTGTGACATTGATGAAGATATATCATCCCAGCTGGCCAGTCTACCTGGGGTCTTATTGGTTAGGCCTGATTCGGATTTCAACTCTCTGAAAAAAGACTATAGTTTATCAAATGTACAGGCAGCTTTCTCATCAAAACTGCAAACTGAAACCAATTTTTTGTTCCCTGCTGGGAGTTCGAAGCACTGGCTTGTCAGAATGGACAAACCTGGGGTTGGGGTTGTTACAAAGGCTCAAATTGTCGATCATTATGCTCAAATACTGACCAAAGTCATGGGGAACGAGACGGATGCACAAATGTGCATATATCATGTTTCCTGGAAAACCAACTTTGGCTTTTCTTGTGAACTTGATGAGGATTGTGCACAGGCGCTATCTGGTGTGCCTGGTGTCTTATCAGTTCAGCCAGATAATAATTTTGAGTCAGAAACTAAGGATTATCGAGGTAGTAACTTAGAAAATAGTTTGGTGAATTCTGATGAAGGAAACCAAGCAGTTCCTTTGAAAACAAAGAAGCTTTTTGTGACAGGTCTATCATTTTATACATCAGAGAAAACCTTACGTGCAGCATTTGAAGGCTTCGGTGAGCTTGTACACGTTAAGGTAATTATGGATAAGATTTCGAAAAGGTCCAAGGGTTATGCATTTGTTGAATATACTACAGAGGAGGCTGCAAGTGCAGCTCTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTGGTAGATGTTGCCAAGACTAACCCACCCAGCAACCGGATTCGTGGCAAACCGTCAGCTTGA 1197 0.3985 MEVLSVPVTFTKCQNFSFVKQKTTQIQVLSISITKLPNNYNQKFSSSYYYSSSYSSNFSCNDWSLAAITYPSLPTSSTSTTQNRHWMVLMENPPHGVHEKPQVIDYYVKTLQKLLGSEIDAQMCIYDASWETHFGFCCDIDEDISSQLASLPGVLLVRPDSDFNSLKKDYSLSNVQAAFSSKLQTETNFLFPAGSSKHWLVRMDKPGVGVVTKAQIVDHYAQILTKVMGNETDAQMCIYHVSWKTNFGFSCELDEDCAQALSGVPGVLSVQPDNNFESETKDYRGSNLENSLVNSDEGNQAVPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVHVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPSNRIRGKPSA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0954 398 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 25 390 - -
Lal13g0954 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 375 IPR000504 GO:0003723
Lal13g0954 398 SUPERFAMILY RNA-binding domain, RBD 300 394 IPR035979 GO:0003676
Lal13g0954 398 SMART rrm1_1 308 381 IPR000504 GO:0003723
Lal13g0954 398 Gene3D - 277 398 IPR012677 -
Lal13g0954 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Lal13g0954 398 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 25 390 IPR039206 GO:0016554
Lal13g0954 398 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 72 164 IPR037045 -
Lal13g0954 398 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 191 276 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0954 Lal-Chr13 6744707 6748581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0954 284 387 C2H2 Transcription Factor Family AT2G19380 31.731 1.22e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0954 - - gmx:100791652 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0954 13 6744707 6748581 Lal13g0954 13 6744707 6748581 ECH
Lal12g0726 12 5503658 5506839 Lal13g0954 13 6744707 6748581 LSH
Lal13g0954 13 6744707 6748581 Lal24g0649 24 4788767 4791866 LSH