LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal13g0918	ATGGATATACCGAAACACCGTACCACTCGAGCTACGTCGCTCAGAGACGCCACCGAGTCCTCCAAGATGGAAGGAACCGGTAGCTGGGACGCTCTTGAATGGACCAAAATTGAGCCAATTTCTCGCTATGTCTCGAACGCGAATATGGATTTCTTGCTCGACTCGGAGCAAGTTGTAGCTGAAGGACATGGGGTTGTCCTTGTTAATACAGATGATGCGGGCACATTGATGGTAACAAATTTCCGTCTTCTCTTTTTGAGCGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCATTAGCAACCATCGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATGCTCGTCAATTAGACAAGACACCACCACAAAGACTGCTCCAGGTGTTCGGAAAAGATATGAGAATTATAGTTTTTGGTTTCAGGCCTCGTACAAAACAGAGACGCGTGATATTTGATGCACTGCTGAGGTGTATAAAGCCAGCAAGATTATGGGATCTTTATGCGTTTGCATCTGGACCTTCTAAGTTTATGAGCAGTTCTCCACAGGTGCGCTTATTGGATGAGTACTTTCGACTTCTTGGCAAAGGTTCCTACCGTGCATCAATGAACATGATTGAAAGTGGGTCTTTCACCTTGTCAAATGACTTGTTGAGAATAAGCAGTGTGAATTCTAGCCACAAAATGTCCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATTATAAGTGATGATGAAGTGCTCCAGGCTTCTAACTTTCGCGCAAGAGGTCGACTGCCTGTAGTTTCATGGTGTCATCCTGATACTGGTGCAGTCCTTGCACGCTCATCCCAACCATTAGTTGGTCTAATGATGAATATGAGGAGCAACATGGATGAAAAACTTGTGGCTGCTCTTTGCAGCAAACTTGATGATGGCTCGCGGAGAAAGCTATATATCGCTGATGCAAGGCCAAGGAAAAATGCATTAGCTAATGGGGCCATGGGAGGTGGTTCAGAATCCTCATCAAATTATTTTCAATCTGAGATAGTCTTTCTTGGGATAGACAATATCCATGCAATGAGAGACAGCTATGCTCGGCTCCGAGAATATGTGGACACTCATGGCAGAGCATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCCACATGGGGTGGAGGCAATTTAAGTAGTATGTCTACTTCGGTATCAACCCTTGGGGATAGTGGATGGTTACTCCATGTTCAAAATGTCTTGGCTGGTTCAGCTTGGATTGCTGCTCGTGTTGCTATGGAAATGGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGAACAAGTCAGTTGGTTTCACTTGCTAATTTGATGCTTGATCCATATTACCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTTGCATTTGGTCACCCATTTTCTGATCGTGTGGGAATGCCATCTTTCCCTGGAAATGGTAGCATGCCTTTCGAGTTATCTAGACAGTCTTCAACTGGCAATTCCTCATCATCGCCCATGCGTCAGTCATCAGGAGCATTCACACCTCAATCTCAAGCTTCATCTCACTCACATAATTCAAACAACTACTCCCCCATTTTTTTGCAGGCTTTCCTGGTGGACTTTTTGGACTGCATGCTTTCTTGTCGTTTTGGAAATTTCTTCGAGAAAGAGAGGCTGCAATGCAATGTTTTTGAAGCTTGTGGGTGCTTGTGGGCATATTTGGCTGATTTGCGTACATCAGAAGGAGGTTTCCATGTGCATTATAATCCCTTTTATGAACCGCTGAAGCACAATGGTCCTCTTCTGCCCCCAGCAGCAGCATTGGCCCCAAATTTATGGCCCCAATTTCACCTTCGTTGGGCCTGTCCAGAAGAAGCAAAGCCTGGGGAGATTGAAGAACAATGTAGGAAGATAATTATGAAAAACTCAGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAAGCCAAAGAAATCTCAAATGCAATGGAGTCATTGAATGCAGAATTACGAATGGAGAAGCAGCGAAACAGCTCAGCTATGAACATTGCCAAGAGGACAAACAAAGAAAATACGGCCATAAAGCGTGCAGTTCAGTCAATTGGTTGCAAGATTCACTTCTCTGCTAGTGGCGATTGCATTGTTGACATTGAAAGCAACCTATTGAAAGCAGCACCAAACTGTTCGTATTCTTCCCATGGGAAAGAATCAGATGGTTCTTTGCATGATAATAAAAAGGACATGTCTGTTTCAGTAACAGTTACAGCAGATGACAATGATCAAATCAGCTCAATTGGTCGAGTATGTGAAACTCTATGCCCATTTCGCTCTGAAGATGGAGCCTGCAAGTGGCCAAGTGGTGGCTGTGCTCAACTAGGTAGCCAGTTTGCCGGTCTGAAGGCAAATTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCGGAGTAA	2490	0.4386	MDIPKHRTTRATSLRDATESSKMEGTGSWDALEWTKIEPISRYVSNANMDFLLDSEQVVAEGHGVVLVNTDDAGTLMVTNFRLLFLSEGTRKVIALGTIPLATIEKFNKIVVKVQSNARQLDKTPPQRLLQVFGKDMRIIVFGFRPRTKQRRVIFDALLRCIKPARLWDLYAFASGPSKFMSSSPQVRLLDEYFRLLGKGSYRASMNMIESGSFTLSNDLLRISSVNSSHKMSQSYPFALVVPKIISDDEVLQASNFRARGRLPVVSWCHPDTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFLGIDNIHAMRDSYARLREYVDTHGRASSDGMSSFLRHGGSTWGGGNLSSMSTSVSTLGDSGWLLHVQNVLAGSAWIAARVAMEMASVLVHCSDGWDRTSQLVSLANLMLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSFPGNGSMPFELSRQSSTGNSSSSPMRQSSGAFTPQSQASSHSHNSNNYSPIFLQAFLVDFLDCMLSCRFGNFFEKERLQCNVFEACGCLWAYLADLRTSEGGFHVHYNPFYEPLKHNGPLLPPAAALAPNLWPQFHLRWACPEEAKPGEIEEQCRKIIMKNSEMQKAKEVAERKAKEISNAMESLNAELRMEKQRNSSAMNIAKRTNKENTAIKRAVQSIGCKIHFSASGDCIVDIESNLLKAAPNCSYSSHGKESDGSLHDNKKDMSVSVTVTADDNDQISSIGRVCETLCPFRSEDGACKWPSGGCAQLGSQFAGLKANFDAFDQLSINDSYFKSE	829

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal13g0918	829	ProSitePatterns	Tyrosine specific protein phosphatases active site.	438	448	IPR016130	GO:0016311\|GO:0016791
	Lal13g0918	829	SMART	gram2001c	49	111	IPR004182	-
	Lal13g0918	829	MobiDBLite	consensus disorder prediction	502	533	-	-
	Lal13g0918	829	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	215	631	IPR029021	-
	Lal13g0918	829	CDD	PTP-MTM-like	261	555	-	-
	Lal13g0918	829	Gene3D	-	63	162	IPR011993	-
	Lal13g0918	829	PANTHER	PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1	19	828	-	-
	Lal13g0918	829	Pfam	Myotubularin-like phosphatase domain	187	564	IPR010569	-
	Lal13g0918	829	MobiDBLite	consensus disorder prediction	1	24	-	-
	Lal13g0918	829	SUPERFAMILY	PH domain-like	52	174	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal13g0918	Lal-Chr13	6398840	6415339	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal13g0918	1	827	Protein tyrosine phosphatase (PTP) family	AT3G10550	65.808	0.0	1106

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal13g0918	K18081		-	gmx:100781842	1329.69

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal13g0918	13	6398840	6415339	Lal13g0918	13	6398840	6415339	ECH
	Lal13g0918	13	6398840	6415339	Lal24g0732	24	5461402	5479644	LSH

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