Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0918 ATGGATATACCGAAACACCGTACCACTCGAGCTACGTCGCTCAGAGACGCCACCGAGTCCTCCAAGATGGAAGGAACCGGTAGCTGGGACGCTCTTGAATGGACCAAAATTGAGCCAATTTCTCGCTATGTCTCGAACGCGAATATGGATTTCTTGCTCGACTCGGAGCAAGTTGTAGCTGAAGGACATGGGGTTGTCCTTGTTAATACAGATGATGCGGGCACATTGATGGTAACAAATTTCCGTCTTCTCTTTTTGAGCGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCATTAGCAACCATCGAGAAGTTTAACAAGATAGTTGTAAAGGTTCAGTCAAATGCTCGTCAATTAGACAAGACACCACCACAAAGACTGCTCCAGGTGTTCGGAAAAGATATGAGAATTATAGTTTTTGGTTTCAGGCCTCGTACAAAACAGAGACGCGTGATATTTGATGCACTGCTGAGGTGTATAAAGCCAGCAAGATTATGGGATCTTTATGCGTTTGCATCTGGACCTTCTAAGTTTATGAGCAGTTCTCCACAGGTGCGCTTATTGGATGAGTACTTTCGACTTCTTGGCAAAGGTTCCTACCGTGCATCAATGAACATGATTGAAAGTGGGTCTTTCACCTTGTCAAATGACTTGTTGAGAATAAGCAGTGTGAATTCTAGCCACAAAATGTCCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATTATAAGTGATGATGAAGTGCTCCAGGCTTCTAACTTTCGCGCAAGAGGTCGACTGCCTGTAGTTTCATGGTGTCATCCTGATACTGGTGCAGTCCTTGCACGCTCATCCCAACCATTAGTTGGTCTAATGATGAATATGAGGAGCAACATGGATGAAAAACTTGTGGCTGCTCTTTGCAGCAAACTTGATGATGGCTCGCGGAGAAAGCTATATATCGCTGATGCAAGGCCAAGGAAAAATGCATTAGCTAATGGGGCCATGGGAGGTGGTTCAGAATCCTCATCAAATTATTTTCAATCTGAGATAGTCTTTCTTGGGATAGACAATATCCATGCAATGAGAGACAGCTATGCTCGGCTCCGAGAATATGTGGACACTCATGGCAGAGCATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCCACATGGGGTGGAGGCAATTTAAGTAGTATGTCTACTTCGGTATCAACCCTTGGGGATAGTGGATGGTTACTCCATGTTCAAAATGTCTTGGCTGGTTCAGCTTGGATTGCTGCTCGTGTTGCTATGGAAATGGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGAACAAGTCAGTTGGTTTCACTTGCTAATTTGATGCTTGATCCATATTACCGGACATTCACAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTTGCATTTGGTCACCCATTTTCTGATCGTGTGGGAATGCCATCTTTCCCTGGAAATGGTAGCATGCCTTTCGAGTTATCTAGACAGTCTTCAACTGGCAATTCCTCATCATCGCCCATGCGTCAGTCATCAGGAGCATTCACACCTCAATCTCAAGCTTCATCTCACTCACATAATTCAAACAACTACTCCCCCATTTTTTTGCAGGCTTTCCTGGTGGACTTTTTGGACTGCATGCTTTCTTGTCGTTTTGGAAATTTCTTCGAGAAAGAGAGGCTGCAATGCAATGTTTTTGAAGCTTGTGGGTGCTTGTGGGCATATTTGGCTGATTTGCGTACATCAGAAGGAGGTTTCCATGTGCATTATAATCCCTTTTATGAACCGCTGAAGCACAATGGTCCTCTTCTGCCCCCAGCAGCAGCATTGGCCCCAAATTTATGGCCCCAATTTCACCTTCGTTGGGCCTGTCCAGAAGAAGCAAAGCCTGGGGAGATTGAAGAACAATGTAGGAAGATAATTATGAAAAACTCAGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAAGCCAAAGAAATCTCAAATGCAATGGAGTCATTGAATGCAGAATTACGAATGGAGAAGCAGCGAAACAGCTCAGCTATGAACATTGCCAAGAGGACAAACAAAGAAAATACGGCCATAAAGCGTGCAGTTCAGTCAATTGGTTGCAAGATTCACTTCTCTGCTAGTGGCGATTGCATTGTTGACATTGAAAGCAACCTATTGAAAGCAGCACCAAACTGTTCGTATTCTTCCCATGGGAAAGAATCAGATGGTTCTTTGCATGATAATAAAAAGGACATGTCTGTTTCAGTAACAGTTACAGCAGATGACAATGATCAAATCAGCTCAATTGGTCGAGTATGTGAAACTCTATGCCCATTTCGCTCTGAAGATGGAGCCTGCAAGTGGCCAAGTGGTGGCTGTGCTCAACTAGGTAGCCAGTTTGCCGGTCTGAAGGCAAATTTTGATGCATTTGACCAACTGTCAATTAATGATAGTTATTTCAAGTCGGAGTAA 2490 0.4386 MDIPKHRTTRATSLRDATESSKMEGTGSWDALEWTKIEPISRYVSNANMDFLLDSEQVVAEGHGVVLVNTDDAGTLMVTNFRLLFLSEGTRKVIALGTIPLATIEKFNKIVVKVQSNARQLDKTPPQRLLQVFGKDMRIIVFGFRPRTKQRRVIFDALLRCIKPARLWDLYAFASGPSKFMSSSPQVRLLDEYFRLLGKGSYRASMNMIESGSFTLSNDLLRISSVNSSHKMSQSYPFALVVPKIISDDEVLQASNFRARGRLPVVSWCHPDTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFLGIDNIHAMRDSYARLREYVDTHGRASSDGMSSFLRHGGSTWGGGNLSSMSTSVSTLGDSGWLLHVQNVLAGSAWIAARVAMEMASVLVHCSDGWDRTSQLVSLANLMLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSFPGNGSMPFELSRQSSTGNSSSSPMRQSSGAFTPQSQASSHSHNSNNYSPIFLQAFLVDFLDCMLSCRFGNFFEKERLQCNVFEACGCLWAYLADLRTSEGGFHVHYNPFYEPLKHNGPLLPPAAALAPNLWPQFHLRWACPEEAKPGEIEEQCRKIIMKNSEMQKAKEVAERKAKEISNAMESLNAELRMEKQRNSSAMNIAKRTNKENTAIKRAVQSIGCKIHFSASGDCIVDIESNLLKAAPNCSYSSHGKESDGSLHDNKKDMSVSVTVTADDNDQISSIGRVCETLCPFRSEDGACKWPSGGCAQLGSQFAGLKANFDAFDQLSINDSYFKSE 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0918 829 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Lal13g0918 829 SMART gram2001c 49 111 IPR004182 -
Lal13g0918 829 MobiDBLite consensus disorder prediction 502 533 - -
Lal13g0918 829 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 631 IPR029021 -
Lal13g0918 829 CDD PTP-MTM-like 261 555 - -
Lal13g0918 829 Gene3D - 63 162 IPR011993 -
Lal13g0918 829 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 828 - -
Lal13g0918 829 Pfam Myotubularin-like phosphatase domain 187 564 IPR010569 -
Lal13g0918 829 MobiDBLite consensus disorder prediction 1 24 - -
Lal13g0918 829 SUPERFAMILY PH domain-like 52 174 - -
Lal13g0918 829 PANTHER MYOTUBULARIN-RELATED 19 828 IPR030564 -
Lal13g0918 829 Coils Coil 652 686 - -
Lal13g0918 829 ProSiteProfiles Myotubularin phosphatase domain. 198 627 IPR010569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0918 Lal-Chr13 6398840 6415339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0918 1 827 Protein tyrosine phosphatase (PTP) family AT3G10550 65.808 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0918 K18081 - gmx:100781842 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0918 13 6398840 6415339 Lal13g0918 13 6398840 6415339 ECH
Lal13g0918 13 6398840 6415339 Lal24g0732 24 5461402 5479644 LSH