Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0913 ATGTTGGAAATGGAGAAGGATTTTGATTCCAAGTTGAAGATTCAGGGGGATTCTTCTTCTAATGGCGGTGGTGTTGGGAATGTCCAGAGATCAAAGAGCTTTGCTTTCAGAGCTCCTCAGGAGAATTACTCTATTCAGGACTTTGAATTGGGAAAGATCTATGGCGTTGGTTCTTATTCTAAGGTAGTGAGGGCAAAGAAGAAGGACACCGGAGCAGTGTATGCATTGAAGATCATGGACAAAAAATTTATTACTAAAGAGAACAAAACTGCTTATGTGAAGTTGGAACGCATAGTGCTTGATCAATTGGATCATCCTGGCATTGTGCAGCTATATTTCACATTTCAAGACGCATTTTCTCTTTACATGGCACTTGAATCGTGTGAAGGCGGAGAGCTTTTTGATCAAATAACCAGGAAAAGTCGTCTAACAGAGGCTGAGACACGATTCTATACAGCTGAAGTTGTGGATGCTCTTGAATACATACATCATTTGGGATTGATACATCGTGATATAAAGCCAGAGAACTTATTACTTACAACTGAAGGACATATCAAAATAGCCGATTTTGGGAGTGTAAAGCCTATGCAGGATAGCCAAATCACCGTCCTTCCAAATGCAGCTTCAGATGACAAAGCCTGCACATTTGTGGGAACAGCTGCTTACGTCCCTCCGGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGAAATGACCTCTGGGCACTTGGATGCACATTGTATCAAATGCTTTCTGGAACTTCCCCTTTTAAAGATGCAAGCGAATGGCTTATTTTCCAAAGAATTATAGCAAGAGAATTTCAATTTCCAGATTACTTTTCTGACGAAGCAAGAGACCTCATTGACCGGCTATTGGACCCTGACCCCAGCAGAAGACTAGGTGCAGGAGCTGGTGGTTATGATGCTTTGAAAAGGCATCCGTTTTTCAAGGGGGTTGACTGGAATAACTTAAGGACACAAGCTCCCCCAAAACTTGCTCCGGAACCTGGGACTCCATCACCCGAGCGTGATGATGCTCAAGAGTCATCGTGGAATCCCTCTCACATAGGGGACAGCTATGCTAGACAACCTAATGGTCCTACATCATCTTCTGAGAAGACTGGGCACATAACCAGGCTAGCTTCAATTGATTCATTTGATTCAAAATGGCAACAGTTTTTGGATCCTGGGGAATCTATTCTTATGATCTCTATGGTTAAGAAATTGCGGAAACTAACAAGCAAGAAAGTGCAGCTCATTCTTACCAACAAACCAAACTTAATCTATGTCGACCCATCAAAGCTAACTGGGAAGGGAGATATAATATGGTCTGACAATCCAAATGATTTAAGCATCCAAGTCACTAGTCCATCGAGTTTCAAGATTTGCACACCTAAAAAGATAATGTCGTTTGAGGACGCAAAGCAAAGAGCGTGGCAGTGGAAAAAGGCGATTGAAGAGCTTCAAAACCGGTAA 1473 0.4236 MLEMEKDFDSKLKIQGDSSSNGGGVGNVQRSKSFAFRAPQENYSIQDFELGKIYGVGSYSKVVRAKKKDTGAVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVQLYFTFQDAFSLYMALESCEGGELFDQITRKSRLTEAETRFYTAEVVDALEYIHHLGLIHRDIKPENLLLTTEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREFQFPDYFSDEARDLIDRLLDPDPSRRLGAGAGGYDALKRHPFFKGVDWNNLRTQAPPKLAPEPGTPSPERDDAQESSWNPSHIGDSYARQPNGPTSSSEKTGHITRLASIDSFDSKWQQFLDPGESILMISMVKKLRKLTSKKVQLILTNKPNLIYVDPSKLTGKGDIIWSDNPNDLSIQVTSPSSFKICTPKKIMSFEDAKQRAWQWKKAIEELQNR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0913 490 SMART serkin_6 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0913 490 CDD STKc_PDK1 46 315 IPR039046 GO:0004674
Lal13g0913 490 MobiDBLite consensus disorder prediction 342 375 - -
Lal13g0913 490 PANTHER BNAA05G28300D PROTEIN 21 486 - -
Lal13g0913 490 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0913 490 Coils Coil 470 490 - -
Lal13g0913 490 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 486 - -
Lal13g0913 490 SUPERFAMILY PH domain-like 309 489 - -
Lal13g0913 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lal13g0913 490 Gene3D Transferase(Phosphotransferase) domain 1 132 334 - -
Lal13g0913 490 MobiDBLite consensus disorder prediction 1 26 - -
Lal13g0913 490 Pfam PH domain 387 489 IPR033931 -
Lal13g0913 490 ProSiteProfiles Protein kinase domain profile. 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0913 490 Gene3D Phosphorylase Kinase; domain 1 46 131 - -
Lal13g0913 490 Gene3D - 360 490 IPR011993 -
Lal13g0913 490 MobiDBLite consensus disorder prediction 325 375 - -
Lal13g0913 490 SUPERFAMILY Protein kinase-like (PK-like) 45 360 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0913 Lal-Chr13 6324964 6333027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0913 1 490 AGC Kinase Gene Family AT3G10540 80.894 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Lal13g0913 Pkinase 2.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0913 K06276 - gmx:100788780 850.892