Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0905 ATGACAGATTTTCAGCCTCTACAGCAGAAGCCTGAACCTGAACCTGCTGAGGCTCGCGCTGGGTATGAGTGTGGGATGGGGGAGTTTATGCGTGGTCAGTTGGATGATTGTATGCCATTTGCTTCATGTAGCTCTTCTCGTGCCCAGGATGATGAGGATGAGGAGGGTGATCAGCTGGTTCGCAGGAGAAGAAGGTCTGATCTTGAAGAGGATGATTTGGCAGAGTCATCAGCTGCGCGGAGGCGCCATTCACGTATTTTGAGTAGATGGGCTGCTCGGCAGGCACAGGAGATGATTACTACTATTGAGAGGAGAAATCGAGAATCTGAGTTGATGGCGCTTGCAGGATTACACACAGTCTCGATGTTGGACTCCTCTTTTCTGAGGGGCTCACAGTCTCCAACTTCTGGACAAGAGGGGACCGTGGAGCGGCCGAGCACTCAAGCATCTTCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTATTGAATCGGGCACATGAAAGGATGAGGGAAAGGTTGCAGCAGCAAAGAAGTCCCGAGTCTAATACTAATATGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCAAAGAAGTTTGGGGGATGCAAGTGAAAATGATTATGGTGCTTGGTCACACAATCACATTGGACCACGAAATGCACATGTTGATGGTAATGGGTCTACCAGGGAGCAGTCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGTAGAGCAGAGTGGCTTGGAGAAACTGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGAATAGCCAGCAGAGAGGTTCACGTGGGAACCGAAGGGATGCTCAAGTGAGTGATGGTGCTCAAGTTGATCGAGTGCGTGATGTGGTAGCTGATCATGATGATGGCCAGCCTGAGCATGTCCGCCGGGATATTTTGAGGTTGCGTGGAAGACAAGCTCTAGTTGATTTGCTTGTGAGGGTAGAAAGGGAAAGACAGAGAGAACTGCAGGGCTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGCATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGACCTGTTGAAGATGAGAGGCCTCCTTCTGTGGCTGCTAGCGAATTAGTTCAGCTAAGACAACGGCACACGGTCTCTGGTTTAAGGGAGGGGTTTCGCTCAAGATTTGAAACTAACAGTAACATTAGTGAAACAAGAAGTGATGAGAACCAAGGAAACAATCTGATAGATGCCCAACAAGAAGATTATGAACACGAGCAGATCAGAAGCATTGAAACTGATGTGAGTCAGCTGCCTAATCAAACAGAAGCTTTGGAGAGCAGCACAAATGAGAATATTAGCTGGCATGAAACTAGTAGTGAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGTTGGCAGAGGAAACTGGCAGCAGAGAACTTATGGTCCATTCAATCAGTTAAGAGATGGAAGTGCAGTCAGTGATTGGCCACAGGATACTACCAGAAATTTAGCTAGGGAAGAGCCTCATCCACAGGAGACTCAAAGAATTTGGCTTGAGGATAGCACAAGGGAAACTGTTGGTAATTGGTCTGAAGTACCTCCTGGAGCTTCAAGAAATCGTCGTGCCGTTCCTTTTCGAAGAATCAATAGATTTCACCCCCCTGATGATGATAATGTGTACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGCTTCCGAGAAAATTTGGACCAACTAATACAGTCATATGTGGAAAGGCGAAGTCATTCCCCAATTAACTGGGATTTGCACAGAAACTTGCCAACACCAACTCTTGCCTCATCCGAACAGGACTCTGGCCAGCAAGGTGTTGAACGTAATGAGGGTCAGCGTGAAGCCATTAACAGACCTTCACTGGTTATGCCTTCACCACCCGTACCTCCACCACAACCACTGTGGCACCAGGATTTGCACCAAACTGGATGGCCTCGCCATAGTGTACATCGTTCTGAAATCGAATGGGAGATGATGAATGATTTACGATCTGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAGCTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTCTCCGCAGCTTTGAACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCTGTCGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGTTGTGTCTGTTGTGATAGCCATATTGACTCACTTTTGTACAGATGTGGGCATATGTGCACTTGTTCAAAATGCGCCAATGAGTTAGTTCGTGGTGGAGGTAAGTGTCCTTTATGCCGAGCACCCATTGTTGAGGTGGTCCGAGCATATTCCATACAGTAA 2517 0.474 MTDFQPLQQKPEPEPAEARAGYECGMGEFMRGQLDDCMPFASCSSSRAQDDEDEEGDQLVRRRRRSDLEEDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGTVERPSTQASSILQMWRELEDEHLLNRAHERMRERLQQQRSPESNTNMSSTMSDSRGSENQRSLGDASENDYGAWSHNHIGPRNAHVDGNGSTREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMNSQQRGSRGNRRDAQVSDGAQVDRVRDVVADHDDGQPEHVRRDILRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPSVAASELVQLRQRHTVSGLREGFRSRFETNSNISETRSDENQGNNLIDAQQEDYEHEQIRSIETDVSQLPNQTEALESSTNENISWHETSSEGGNWQEQIAEVGRGNWQQRTYGPFNQLRDGSAVSDWPQDTTRNLAREEPHPQETQRIWLEDSTRETVGNWSEVPPGASRNRRAVPFRRINRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRENLDQLIQSYVERRSHSPINWDLHRNLPTPTLASSEQDSGQQGVERNEGQREAINRPSLVMPSPPVPPPQPLWHQDLHQTGWPRHSVHRSEIEWEMMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSVDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIQ 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0905 838 MobiDBLite consensus disorder prediction 173 244 - -
Lal13g0905 838 MobiDBLite consensus disorder prediction 179 207 - -
Lal13g0905 838 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 837 - -
Lal13g0905 838 Coils Coil 159 179 - -
Lal13g0905 838 MobiDBLite consensus disorder prediction 54 80 - -
Lal13g0905 838 Pfam Zinc finger, C3HC4 type (RING finger) 783 830 - -
Lal13g0905 838 Coils Coil 715 735 - -
Lal13g0905 838 MobiDBLite consensus disorder prediction 1 21 - -
Lal13g0905 838 MobiDBLite consensus disorder prediction 127 149 - -
Lal13g0905 838 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 837 - -
Lal13g0905 838 MobiDBLite consensus disorder prediction 644 666 - -
Lal13g0905 838 MobiDBLite consensus disorder prediction 40 80 - -
Lal13g0905 838 CDD mRING-HC-C3HC5_NEU1 785 825 - -
Lal13g0905 838 ProSiteProfiles Zinc finger RING-type profile. 786 825 IPR001841 -
Lal13g0905 838 SUPERFAMILY RING/U-box 779 831 - -
Lal13g0905 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 836 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0905 Lal-Chr13 6239375 6246460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0905 763 832 C3H Transcription Factor Family AT3G06140 37.143 5.53e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0905 - - lang:109336295 1520.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0799 12 6240057 6246565 Lal13g0905 13 6239375 6246460 ECH
Lal13g0905 13 6239375 6246460 Lal13g0905 13 6239375 6246460 ECH