Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0898 ATGGGCAGCGAAACCCCACCACTGCCACTCTCAGTGGCACCACCACCGCCGCCGTCAACACCAGTCTTAGTTGCATGTGCTGCTTCTGCATCACCACTTTCTCATACTTCTCTTGCTCCTGGGTTCAGGTTTCACCCTACTGATGAAGAACTTGTTATTTATTATCTTAAACGCAAGGTTGGTGGAAAAAGCTTCCGATTTGATGCAATATGTGAGGTCGATGTTTACCGCAGCGAGCCTTGGGACCTTGCAGATAAGTCAAGGTTGAAGACAAGGGACCAAGAATGGTATTTTTTCAGTGCATTGGACAAGAAATATGGGAATGGTGGCAGAATGAACAGAGCTACAAACAAAGGGTACTGGAAAGCCACCGGGAATGACCGTCCAGTTAAGCATGAACAAAGGACCGTGGGATTGAAGAAAACTTTGGTGTTTCATAGCGGTCGGGCTCCGGATGGGAAGAGGACCAATTGGGTCATGCATGAATATAGACTTGTTGATGAAGAGCTGGAGAAAGCTAGGACTGCGAATGAGTCCTCAAAGGTGAGAGTATTTCACAAGAATAACATAGGACCTCCAAATGGACAACGATATGCACCTTTTGTTGAAGAGGAGTGGGATGATGAGTTAGGTTTAGTTCCTGGAGCAGAGTCTGCTAAACCCGTTTCTGTTACTCAACAACCATCTGTCAAAACAAATGGCCATGTTTTATGTATTCAATGGAGAAAAGATGTCGAACAGGACACTCAATCTGTTACCAAGGCTCCATTTGATGTCAACAAGCTTCCTATAGAGACTCAAAATCTTCTTGCCGTCTGCAAGAGGGAGAGTATGGCTGAGTTCCCATCACCAGAAAAGGAGGACTCTAAGCCTATGCGAGATGAGTATCCTTCACCCCAAGCAGATAATCACAAGGCTTACTCCCAAATATACAAAAGGAAGCGATATAACTTGAATAACCATTTGAATGTTTCTGGAGATTCAATCAGAACCAGCCAGGATCCGTGCTCATCGACAATAACTACGGCTGCTACGTTACCCCCAACGGCAACTGCCATCGCCAACCACACAAATATCAGCGCTACGCCAAAAAAACATTTCCTGTCTGCACTGGCGGAGTTTACTCTGATGGATTCTCTTGAATCGAAAGAGGCTCAACTGCCAGATTTTGATGCTGATAATATCGAGTTAACCGTGCCTCCTAGCTGTGTAAAATTCATCAAACACTTGCAGAGTGAGGTGCAAAAGCTTTCTGTTGAAAGGGAGGCTATGAGGTTTGAGATGATGAGTTCCCGAGCAATGATTAACATTCTTCAGTCACGTGTCGATCATCTGAACAAAGAAAATGAAGAGTTGAAGAAGATAGTCGGGAGGAATTCTTAG 1383 0.4483 MGSETPPLPLSVAPPPPPSTPVLVACAASASPLSHTSLAPGFRFHPTDEELVIYYLKRKVGGKSFRFDAICEVDVYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVKHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELEKARTANESSKVRVFHKNNIGPPNGQRYAPFVEEEWDDELGLVPGAESAKPVSVTQQPSVKTNGHVLCIQWRKDVEQDTQSVTKAPFDVNKLPIETQNLLAVCKRESMAEFPSPEKEDSKPMRDEYPSPQADNHKAYSQIYKRKRYNLNNHLNVSGDSIRTSQDPCSSTITTAATLPPTATAIANHTNISATPKKHFLSALAEFTLMDSLESKEAQLPDFDADNIELTVPPSCVKFIKHLQSEVQKLSVEREAMRFEMMSSRAMINILQSRVDHLNKENEELKKIVGRNS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0898 460 Coils Coil 435 455 - -
Lal13g0898 460 MobiDBLite consensus disorder prediction 277 304 - -
Lal13g0898 460 Coils Coil 407 427 - -
Lal13g0898 460 Pfam No apical meristem (NAM) protein 40 165 IPR003441 GO:0003677|GO:0006355
Lal13g0898 460 ProSiteProfiles NAC domain profile. 38 187 IPR003441 GO:0003677|GO:0006355
Lal13g0898 460 MobiDBLite consensus disorder prediction 279 300 - -
Lal13g0898 460 SUPERFAMILY NAC domain 32 172 IPR036093 GO:0003677|GO:0006355
Lal13g0898 460 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 31 456 - -
Lal13g0898 460 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 31 456 - -
Lal13g0898 460 Gene3D NAC domain 47 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0898 Lal-Chr13 6190533 6196927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0898 371 454 NAC Transcription Factor Family AT3G10480 48.864 2.06e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal13g0898 NAM 6.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0898 - - gmx:100808783 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0898 13 6190533 6196927 Lal13g0898 13 6190533 6196927 ECH
Lal12g0790 12 6149833 6155108 Lal13g0898 13 6190533 6196927 LSH