Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal13g0896 | ATGGAAGCACCAGAGGAAGTATCTTCGGGTGGGTCCAAAGAGCAAAGCAACATTGTTAAAGGGAAAAGAACCAAAAGGGTAAAGGCACAATCCCCTATCCCCTTCTCCATCACTGCTATTTCTTCCACTAGAGAAAAAGAAGATTACAACAATGTTCATGACAACAACAACAACAACAAATATGAAAACAATAACAATAACAATACCATTCCCACCACTTCTTATTCAGGGTTACAAGACAACATTAATGATGAAGAAGAGGACATGGCAAATTGTCTGATCCTTCTAGCACAAGGACAATCAAGGGAATCTCCGAAACACGCCGCGGCCGGTGGTGGTGAAGACTTGACCGGAGGTAAGAGCTATAGTAAGTACAGCAGTAGAAAATTGTCAGAAGCAGGTGGTATAGGGTCAGGAAGAGGAGGGTGTTATGTATATGAATGCAAGACATGTAGTAGAACTTTTCCTTCATTTCAAGCACTTGGAGGCCATAGGGTTAGTCACAAAAAGCCAAAGGCCATGGCTGCTACAATGGCCATTAATGGGACTCAAGAGAAAAAACAACTTTTTTTGTCATCAGAAGAGGAAGAATTTCAATTCAAGACCAATAATAATAGACCAAATTCTCTTAAACTGAATAGCAGAGGGAATTTTTACAGCAATAACAAATCCAAGGTTCATGAGTGCTCCATTTGTGGTGCTGAATTCACATCAGGACAGGCATTGGGTGGCCATATGAGACGGCATCGCGCACCGGTTGGGACTAACACTACACTCTCTTTGGCACCAATAGCTTTGGAACCTGAAGAAGATCTACAACCTAGAAAGAAAAGAAACTTTTTGTCTTTGGATTTGGATCTTAACCTTCCTGCACCAGAACCAGAAGATGATCATAGAGAACCCAAGTTTCCCTTTGCATCCAAGCAACAACAACAACAACAACAGCAACAGCAACAATCTAATATTGCCTTCTCCACCCTCAGCTTTGTGCAACAGAATATAATGTTTTATGAGGTTATGACTATAGAGGAGGAGAGCATAAAGGGTGTTTCTAATGTGCCAAAAATTAATTGCATACTTATTACACCTGACCTAAGCAACAAATGA | 1107 | 0.4083 | MEAPEEVSSGGSKEQSNIVKGKRTKRVKAQSPIPFSITAISSTREKEDYNNVHDNNNNNKYENNNNNNTIPTTSYSGLQDNINDEEEDMANCLILLAQGQSRESPKHAAAGGGEDLTGGKSYSKYSSRKLSEAGGIGSGRGGCYVYECKTCSRTFPSFQALGGHRVSHKKPKAMAATMAINGTQEKKQLFLSSEEEEFQFKTNNNRPNSLKLNSRGNFYSNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLAPIALEPEEDLQPRKKRNFLSLDLDLNLPAPEPEDDHREPKFPFASKQQQQQQQQQQQSNIAFSTLSFVQQNIMFYEVMTIEEESIKGVSNVPKINCILITPDLSNK | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal13g0896 | 368 | MobiDBLite | consensus disorder prediction | 101 | 120 | - | - | |
| Lal13g0896 | 368 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 146 | 173 | IPR013087 | - | |
| Lal13g0896 | 368 | SUPERFAMILY | beta-beta-alpha zinc fingers | 145 | 249 | IPR036236 | - | |
| Lal13g0896 | 368 | SMART | c2h2final6 | 227 | 249 | IPR013087 | - | |
| Lal13g0896 | 368 | SMART | c2h2final6 | 146 | 168 | IPR013087 | - | |
| Lal13g0896 | 368 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 148 | 168 | IPR013087 | - | |
| Lal13g0896 | 368 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
| Lal13g0896 | 368 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 229 | 249 | IPR013087 | - | |
| Lal13g0896 | 368 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 12 | 327 | - | - | |
| Lal13g0896 | 368 | MobiDBLite | consensus disorder prediction | 287 | 320 | - | - | |
| Lal13g0896 | 368 | MobiDBLite | consensus disorder prediction | 54 | 80 | - | - | |
| Lal13g0896 | 368 | MobiDBLite | consensus disorder prediction | 305 | 320 | - | - | |
| Lal13g0896 | 368 | Pfam | C2H2-type zinc finger | 226 | 252 | - | - | |
| Lal13g0896 | 368 | Pfam | C2H2-type zinc finger | 145 | 171 | - | - | |
| Lal13g0896 | 368 | Gene3D | Classic Zinc Finger | 144 | 249 | - | - | |
| Lal13g0896 | 368 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 227 | 249 | IPR013087 | - | |
| Lal13g0896 | 368 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 12 | 327 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal13g0896 | Lal-Chr13 | 6178285 | 6180093 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal13g0896 | 1 | 319 | C2H2 Transcription Factor Family | AT5G04390 | 42.778 | 1.38e-67 | 215 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Lal13g0896 | zf-C2H2_6 | 7.4e-13 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal13g0896 | - | - | lja:Lj5g3v1698900.1 | 371.703 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal12g0788 | 12 | 6129885 | 6130991 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal20g0117 | 20 | 767694 | 768548 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal1g1797 | 1 | 20297015 | 20297863 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal12g0788 | 12 | 6129885 | 6130991 | ECH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal24g0712 | 24 | 5314441 | 5319520 | ECH | |
| Lal2g0316 | 2 | 1887267 | 1888184 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal9g0297 | 9 | 1909193 | 1910110 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal1g0404 | 1 | 2487392 | 2488330 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal10g1218 | 10 | 18542256 | 18543194 | Lal13g0896 | 13 | 6178285 | 6180093 | ECH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal2g0316 | 2 | 1887267 | 1888184 | ECH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal9g0297 | 9 | 1909193 | 1910110 | ECH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal1g0404 | 1 | 2487392 | 2488330 | ECH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal10g1218 | 10 | 18542256 | 18543194 | ECH | |
| Lal12g0788 | 12 | 6129885 | 6130991 | Lal13g0896 | 13 | 6178285 | 6180093 | LSH | |
| Lal13g0896 | 13 | 6178285 | 6180093 | Lal24g0712 | 24 | 5314441 | 5319520 | LSH |