Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0887 ATGAGCAACACTTTTGATTCTGATAGCCCTTCAGAGGAAGGAAACTTATCATATTATACTATTGGATTATCTATTGGATTTCTCTTCATCATAATGTTCATAGCTGTCACTTCATATTACTGCACCCATAGAAACTTTCGTAACAGGATATCTACAAGATCCAATAATGGCAGCACCAACATTTCTAATAGAGATATTTCTGTTATAACTATTCAAGTTCAGAGTGAGGAACAAAAAGAAGCCATTTTTAACAGTTACCCTCAAATGTTGTACTCTCAAGCCAAGCTTCACAAGCCTAAACATTCTTCAACAACACTAAGTTGCTCAATATGTTTAGCAGATTATAATGATTCGGAGTGGTTGAGGTTCTTGCCAGATTGTGGTCACTTTTTTCATAAGGAATGCATTGATATGTGGTTGAGGTTAAACATGTCTTGTCCTGTTTGTAGAAACTCTCCCTTCCCAACTCCTCTTCCTACTCCCATTGCTGAAGTTACTCCTTTCGCTAGAGATTGA 516 0.3682 MSNTFDSDSPSEEGNLSYYTIGLSIGFLFIIMFIAVTSYYCTHRNFRNRISTRSNNGSTNISNRDISVITIQVQSEEQKEAIFNSYPQMLYSQAKLHKPKHSSTTLSCSICLADYNDSEWLRFLPDCGHFFHKECIDMWLRLNMSCPVCRNSPFPTPLPTPIAEVTPFARD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0887 171 SMART ring_2 108 149 IPR001841 -
Lal13g0887 171 Pfam Ring finger domain 107 150 IPR001841 -
Lal13g0887 171 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lal13g0887 171 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 2 167 - -
Lal13g0887 171 SUPERFAMILY RING/U-box 83 156 - -
Lal13g0887 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 167 IPR045899 -
Lal13g0887 171 CDD RING-H2_EL5_like 108 150 - -
Lal13g0887 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0887 Lal-Chr13 6111981 6112496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0887 14 170 C3H Transcription Factor Family AT5G06490 41.279 1.59e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0887 - - adu:107466513 186.808