Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0881 ATGGTTTTGAAATGGAGGTTTAACTTTTCTGTTGTTTTAGCTGGTCAACAATTCAACATGCATGCACATAACATGGCAGGAAAGTTCATATTCACAATGGACCAGAAGGATATAACTAGATTCATAACCAAAACGATTGATAGTTTCATTCAGGATCAGTTAATCAACAAAGAACGAAGAATCGAACATAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGACAAAGACACTGAGGTGGAATACTCTGATCAAGCGGTACTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAGTACCTACAATATGGAAACCAAGCTTGCTCGGCTTGATCATGCTGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTTCCAAATTTCTATCTCTCAGCTTGGGCACACCTAAATCTCTCCTACCTATGGAAGTTGAGGAGCAATACACAAAATTGTATTTTTCATGCTCTTGAGATGTTCATAGTTGATCCTTTATTCTCTCGTGTTGATTTCGCTCCTGATCTATGGAAAATTCTGTTTCTTCCCCACATGAGCTCCATTGTAGGGTGGTATTCCGAGGAAAGGCATAAACTTATGATGGAAGTGGTATCCGGCTCTGCTAATTTGTCCTTTACAGCTGACTTAGATCAAGTTTTCAACGAGTCTTTGGTATCGTCCATGAGGCCACACCAATTAGATAAACTGCGAAAGCTGGACCAGCTTTATGGAGAATCATTGGATGAGAACACAAGGCTATATGCAAAGTACTATAAGAATTGCATGAACTCCGATTCCACCTCAGGCAAAATGGTTTCTATGTTGCCAATTGCTGAGCCCCCAATGACTCCTTTACATGAGTTGAGCCTGTCTATTCCCGATTACGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGCTTTTCTTCGACATCAATTCCTAAAGATATTGTAAATGAAAGTTTCAACAGAGAGAATTCAGCTTCCAGCCATTCAAAGAAGGCAGAGAAATCATCTACATGGGGTGCTAAGGATAGCATCATTAAAGAGAATGACAATTATTCAGAATCTGACCTTGATGGTGTATCTGTGGATTCTGATAACAAAAATAATATTTTCTCACCTGAAAAGAAGATAATCAAGGATGAGTATATAGAACCAAAAGAGGATTCATCAAACCAGAAGAATCAAATATATTCTCCTAATCTCTCCCCCTTGGACTCCCGAAGAACTTCTCTCGATAATTCGTCCTCAAATCCTGATTTAAGTAGTAAAAGAGAACCCAAGACTTTGCGCTCAATGTCTAGTCGTTTTAGGGATTCAGCTATTTCTGATTTAACATTATCTCCAGACATGAGCTCTGATCACATTTTCAACTCTGATAATGATGTGATGGTATTCAAGAACAATCAGAGGAAAAACTATAACCATACGCTAAGTATGAATCATGACAATGATAATAGCCTAATACTAAATGACAGCTCCCTTTGTGAAAGCGATGATGGATATCAGGGCTGCATTTCATTGCCAAAATTGGAGAAGCCGACTAGTGGATCAAAACCACCAAAAGATTTTGTTTGTCCGATAACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACAGGAAATACAACATGCCCGATCACACGACAGCCTCTATCTGCTATCACATTACCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAAAAGCATCCTGAACTAGCTCAGGAATTATCAAATGTTGACACACCAAGGAGTTCTTCTTTATCTCCCTTCGCAAAAGACATCCCGATGCACTCCATTATAGGTACAGCAGATTCACCAAATCAAAAGAACAAAGGAGAGTATAATAAACAAAGAAGCAAAAGATTTATGCAGGTTCTTGTCTCAACATCTCCAACTAGTGTTCTGTCTCAAGCTGCAGTTGAAACAATTACGAATTGCTTAAAACCTTACATTTCAACTCTATGTACATCAGAAAACTTGCAAGAATGTGAAGAAACTGTAATGGGAATAGCCAAATTATGGAAGGATTCAAAGACTGATCCTCAGATTCTTTCTTATTTATCAAAGCCAACTATCATAAATAGTTTAGTGGAAGTACTTTCAGCTTCAATGAGTAGAGAAGTTCTGAGAACATCAATTTATATTCTTTGCAATCTAATTTCTGCTGATGAAGGTGTTGGAGAAACACTTAATAATCTGGATTCCGATTTCGATTGCATGACCACTCTACTTAAGAATGGGTTGGCTGAGGCTGCCCTTCTAATTTACCAATTGAGACCAGTTTACTCTCAGCTCCCATCACATGAACTTATACCCTCCCTTGTCAAGGTGATCCAGGACAAAAATGAGGACTTAAATGATTTTCAGTTAGCTTTGGGGCCCAAAGATGCGGCTATAATAATTCTTGAGCAAATTTTGATAGGAGGGGATGAATATAGCAGATCCCTTAATGCTTTGAATATCATTTCAGCAAATGGAATTCCAGCACTACTGAAGTATTTGGATAGGATGGAGGGACGGAGGGCTATTATTTACGTACTTCTGTGTTGTATGCAAGCCGAAAAAGGTTGCAAGAGCTCGATAGCAAACATAATTGAATTAACTCCAGTTCTTGAATTATTTCATGCCGGAAATGATAGTGTGAGAGGCATCTGTGTAGAGTTTCTTGCAGAACTGGTTCAATTGAATAGAAGGACATTCTGCAACCAGATATTACAGATGATCAAGGATGAAGGAACATTTAGTACGTTGCATACATTTCTCGTTTATCTTCAGATGGCTCCAATGGAGCATCAACTTGCAGTTGCCAGTCTTCTTCTTCAGCTTGATCTTTTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAAACATTGATTGAAGCACTTTGGCAAAAGGATTTCTCCAAAAATCAAATGAAGGCTTTAGATTTTTTACTATTTCTTATTGGATATGTCACTTCCTCAGGAAAGTCTTACGCCGAAGCTTGGCTGCTCAAGATTGCTGGATTTGATCAACCTTATAATGCTTTAATGGAGGCCGGGGAGTTGGGGGAATTTGACAATGATATGATGGAAACAATGGAGGATGAAAAGAAGGCTCTGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTTTGCAACCATGAAAATGGTTCCATATTTAAAGCTTTGGAAGAATGCTTAAGGAGTAATTCCGTAAATATGGTAAAATCTTGCCTTGTTCTTGCCACATGGTTGACACACATGCTTTCTACTCTTCCCGAAACCGGTATAAGGGATGTTGCTCGCAAATCCTTGCTTCATGAACTTATAAATGTCCTCCACTCATCCAAGAACTTGGAGGAAGTAATACTGGCTACCCTATCTTTGAAGGCTTTCCTTAATGATCCATTTGCTCATGAAGCACTAGGAGTTTATGCTAAAAGCATCTACAGAACTTTGAGGAAGCTGAGGAAATATTCAATGGTGGCAGTTGATATTATGAAGGTCTTACTAAACTTAAAATCTGTTGATATGACAGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTATCTGAATGGTCAAGTCTTAAGTGGACACTCTGATGGAACTATCAAGTTATGGGATTCAAGGAAGAGAGTACCAAGAGTAATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATCACTCTGTTATTCCGGCGATAGACTCTATAGTGGCTCGTTAGACAAAACCATCCGGGTTTGGATGATTAAACCTGATGAAATTACATGTATTGATGTTCATGACGTTAAGGAAACAGTGTATGAGTTGACAGCTAATGCTAAATTGGCATGCTATGTATCTCAAGGAACTGGAGTCAAGGCAAGGCTATTATGTTACTTAGAAACAACTCAAATAGAAATGCAGTTTCATAACAAGATTAAAATCAGTAAATTTTGGATGTTGCAGGTTTATAATTGGTCAGATACTCCAAAGGTCATCAATTTCAACAAATATGTGAAATGTCTTGCCATTGCTGGGGACAAACTATATTGTGGATGTTCTGGATACAGCATCCAGGAGGTTCACTTGTCAAATTATACATCAATTTCATTCTTCTCCGGCACAAGAAAATTGTTGGGAAAACAAACCATACATTCCCTTCAAATTCATGATGGTTTTCTCTTTGCTTGTGGCTCTTCTGTTGATTCAACTGCAGGAAAGGTATTTTCACTCTCCACAAAAATGGTGGTAGGGTCACTCTTGACTGGATTTGACATCCATCGCGTAGCCATAAGCAGTGACTTCATATTTGCTGGTACAAAATATGGAACCATTAATGTTTGGCTGAAAGATAAGTTAACTCAGGTTGCTTCCATCAAAATGGCTGGTGGCCACACAAAAATCACATCACTAGTATCTGATGCTGATGGTATGATGCTTTATGTTGGTTCTTCTGATGGCAAAATCCAGGTTTGGGCTTTGGATTAA 4614 0.3871 MVLKWRFNFSVVLAGQQFNMHAHNMAGKFIFTMDQKDITRFITKTIDSFIQDQLINKERRIEHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAISTYNMETKLARLDHAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSYLWKLRSNTQNCIFHALEMFIVDPLFSRVDFAPDLWKILFLPHMSSIVGWYSEERHKLMMEVVSGSANLSFTADLDQVFNESLVSSMRPHQLDKLRKLDQLYGESLDENTRLYAKYYKNCMNSDSTSGKMVSMLPIAEPPMTPLHELSLSIPDYVKFGPILPKSAGFSSTSIPKDIVNESFNRENSASSHSKKAEKSSTWGAKDSIIKENDNYSESDLDGVSVDSDNKNNIFSPEKKIIKDEYIEPKEDSSNQKNQIYSPNLSPLDSRRTSLDNSSSNPDLSSKREPKTLRSMSSRFRDSAISDLTLSPDMSSDHIFNSDNDVMVFKNNQRKNYNHTLSMNHDNDNSLILNDSSLCESDDGYQGCISLPKLEKPTSGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSAITLPKTNYVLKRLITSWKEKHPELAQELSNVDTPRSSSLSPFAKDIPMHSIIGTADSPNQKNKGEYNKQRSKRFMQVLVSTSPTSVLSQAAVETITNCLKPYISTLCTSENLQECEETVMGIAKLWKDSKTDPQILSYLSKPTIINSLVEVLSASMSREVLRTSIYILCNLISADEGVGETLNNLDSDFDCMTTLLKNGLAEAALLIYQLRPVYSQLPSHELIPSLVKVIQDKNEDLNDFQLALGPKDAAIIILEQILIGGDEYSRSLNALNIISANGIPALLKYLDRMEGRRAIIYVLLCCMQAEKGCKSSIANIIELTPVLELFHAGNDSVRGICVEFLAELVQLNRRTFCNQILQMIKDEGTFSTLHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSKNQMKALDFLLFLIGYVTSSGKSYAEAWLLKIAGFDQPYNALMEAGELGEFDNDMMETMEDEKKALNSWQKRVAFVLCNHENGSIFKALEECLRSNSVNMVKSCLVLATWLTHMLSTLPETGIRDVARKSLLHELINVLHSSKNLEEVILATLSLKAFLNDPFAHEALGVYAKSIYRTLRKLRKYSMVAVDIMKVLLNLKSVDMTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKLWDSRKRVPRVIQETHEHTKAVTSLCYSGDRLYSGSLDKTIRVWMIKPDEITCIDVHDVKETVYELTANAKLACYVSQGTGVKARLLCYLETTQIEMQFHNKIKISKFWMLQVYNWSDTPKVINFNKYVKCLAIAGDKLYCGCSGYSIQEVHLSNYTSISFFSGTRKLLGKQTIHSLQIHDGFLFACGSSVDSTAGKVFSLSTKMVVGSLLTGFDIHRVAISSDFIFAGTKYGTINVWLKDKLTQVASIKMAGGHTKITSLVSDADGMMLYVGSSDGKIQVWALD 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0881 1537 Pfam WD domain, G-beta repeat 1268 1296 IPR001680 GO:0005515
Lal13g0881 1537 Pfam WD domain, G-beta repeat 1505 1534 IPR001680 GO:0005515
Lal13g0881 1537 Pfam WD domain, G-beta repeat 1240 1255 IPR001680 GO:0005515
Lal13g0881 1537 SUPERFAMILY ARM repeat 660 955 IPR016024 -
Lal13g0881 1537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1267 1296 - -
Lal13g0881 1537 SMART Ubox_2 537 601 IPR003613 GO:0004842|GO:0016567
Lal13g0881 1537 ProSiteProfiles Trp-Asp (WD) repeats profile. 1242 1255 IPR001680 GO:0005515
Lal13g0881 1537 MobiDBLite consensus disorder prediction 365 450 - -
Lal13g0881 1537 Pfam U-box domain 535 605 IPR003613 GO:0004842|GO:0016567
Lal13g0881 1537 ProSiteProfiles Trp-Asp (WD) repeats profile. 1503 1537 IPR001680 GO:0005515
Lal13g0881 1537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 524 616 IPR013083 -
Lal13g0881 1537 CDD RING-Ubox_PUB 538 580 IPR045210 -
Lal13g0881 1537 Gene3D - 685 959 IPR011989 -
Lal13g0881 1537 SUPERFAMILY WD40 repeat-like 1238 1536 IPR036322 GO:0005515
Lal13g0881 1537 ProSiteProfiles Trp-Asp (WD) repeats profile. 1267 1296 IPR001680 GO:0005515
Lal13g0881 1537 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 1537 - -
Lal13g0881 1537 SMART WD40_4 1455 1491 IPR001680 GO:0005515
Lal13g0881 1537 SMART WD40_4 1217 1255 IPR001680 GO:0005515
Lal13g0881 1537 SMART WD40_4 1494 1535 IPR001680 GO:0005515
Lal13g0881 1537 SMART WD40_4 1260 1297 IPR001680 GO:0005515
Lal13g0881 1537 Gene3D - 1206 1347 IPR015943 GO:0005515
Lal13g0881 1537 MobiDBLite consensus disorder prediction 404 437 - -
Lal13g0881 1537 Gene3D - 1358 1537 IPR015943 GO:0005515
Lal13g0881 1537 Coils Coil 54 74 - -
Lal13g0881 1537 SUPERFAMILY RING/U-box 533 606 - -
Lal13g0881 1537 MobiDBLite consensus disorder prediction 384 403 - -
Lal13g0881 1537 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 1537 - -
Lal13g0881 1537 ProSiteProfiles U-box domain profile. 533 608 IPR003613 GO:0004842|GO:0016567
Lal13g0881 1537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1503 1537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0881 Lal-Chr13 6081976 6091987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0881 535 925 U-box Gene Family AT1G23030 26.847 3.55e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0881 - - lang:109336328 2763.41