Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0872 ATGGAGCAAGAAGAGCACGAAGTGTACGGCGCAGACATTCCCGACGAGGTCGAAATGGATGAACAAGAAGAAGAACAGCAACAACAACAACAACAACAACAACACAATCCCACAACTAACCCTAGCAAGGAATTAGGTGACATGAAGAAGAGGCTCAAGGAGATCGAAGATGAAGCTGCGGCTCTTCGCGAGTTGCAGGCCAAGGTCCAGAAAGAAATGGGTGCTGTTCAAGAAGATCCAGCTGGTTCTTCAGCAACTATAGCTGAAAAGGAGGAAGTTGATGCTAGATCTATCTATGTTGGCAATGTTGATTATGCATGTACACCTGAAGAAGTCCAACAACATTTTCAGTCATGTGGAACAGTTAACAGAGTCACAATATTGACAGACAAATTTGGTCAGCCAAAAGGATTTGCGTATGTAGAGTTTGTGGAAGTTGATGCTATTCAGAATGCTATCCTGTTGAATGAATCAGAATTGCATGGACGACAACTTAAGGTGTCTGCTAAGCGCACAAATGTCCCTGGAATGAAACAGTATTATGGAAGACGTCCTATGGGCTTCCGAGGTAGAAGGCCTTTCATGCCATCTCCATTCTATCCGCCAGCTGGTTTTGGAACTTATGGCAAAAGGGAAGGGTTCCAAGGTATAGACGACCCACAAGATACAGGCCATATTAATGCTGAATCTCGGTTGAATAGATGA 705 0.4411 MEQEEHEVYGADIPDEVEMDEQEEEQQQQQQQQQHNPTTNPSKELGDMKKRLKEIEDEAAALRELQAKVQKEMGAVQEDPAGSSATIAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNAILLNESELHGRQLKVSAKRTNVPGMKQYYGRRPMGFRGRRPFMPSPFYPPAGFGTYGKREGFQGIDDPQDTGHINAESRLNR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0872 234 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 207 - -
Lal13g0872 234 MobiDBLite consensus disorder prediction 210 234 - -
Lal13g0872 234 CDD RRM_II_PABPs 97 168 - -
Lal13g0872 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 172 IPR000504 GO:0003723
Lal13g0872 234 MobiDBLite consensus disorder prediction 1 52 - -
Lal13g0872 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Lal13g0872 234 MobiDBLite consensus disorder prediction 26 43 - -
Lal13g0872 234 Gene3D - 9 178 IPR012677 -
Lal13g0872 234 SUPERFAMILY RNA-binding domain, RBD 87 195 IPR035979 GO:0003676
Lal13g0872 234 SMART rrm1_1 97 168 IPR000504 GO:0003723
Lal13g0872 234 Coils Coil 45 72 - -
Lal13g0872 234 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0872 Lal-Chr13 5971533 5976471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0872 97 168 Eukaryotic Initiation Factors Gene Family AT2G36660 35.526 1.85e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0872 K14396 - gmx:100527545 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0757 12 5727377 5733721 Lal13g0872 13 5971533 5976471 LSH