Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0870 ATGTATTGGGAAGTTATGGAAGGAAAAATGGGTTGGGGAATAATAGAAGATGAAGGTTGGAGAAAGGGACCTTGGATTGCTGAAGAGGACAAATTGCTCATTAAATATGTAGAGCAATATGGTGAGGGAAGATGGAACTCTGTTGCTAGCATTATAGGACTGAAAAGAAATGGGAAAAGTTGCAGATTGAGATGGGTAAATTACCTTAGACCAGACCTCAAGAGGGGTCAGATAACAGCACAAGAAGAGAGTATAATTATAGAGCTACATGCTATGTGGGGAAACAGGTGGTCAACAATCGCAAGAAGCTTGCCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAGAACTCATTTCAAGAAAAAGGCGAAAACTCCCTCTGATGCTGCTGAAAAGGCGAAAATTCGCCTCTTGAAGAGCCAGCAATTTCAACAGCTTCAGCAACAACAACAGAAGCAGTTGAAGCAGCATCAGGTTCAACAACAACAACTGCAATTCAACTTAGACATGAAAAACATCATGAACATGTTTGAGGAAAATGGCAATATGGTACCTTGTACATCTCAAGAGACACAAGAAATGTTCAGCAATATCTACCCAAACACCACACCATATGAGGAGGGCTATTTCTACTCTATGGTCAATGGTAATGCATCTGCACCAACCTCTTCAAATGAAGAAACTTTGTGGGATGGGCTATGGAACTTCGATGATGTTCTTTACAATTTTAGTGCAGCTAGTGCTCCAAGCAAAGCTAGTCTGCAAAATTTAGTTGCACCCTTTTGTTAA 792 0.4028 MYWEVMEGKMGWGIIEDEGWRKGPWIAEEDKLLIKYVEQYGEGRWNSVASIIGLKRNGKSCRLRWVNYLRPDLKRGQITAQEESIIIELHAMWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKTPSDAAEKAKIRLLKSQQFQQLQQQQQKQLKQHQVQQQQLQFNLDMKNIMNMFEENGNMVPCTSQETQEMFSNIYPNTTPYEEGYFYSMVNGNASAPTSSNEETLWDGLWNFDDVLYNFSAASAPSKASLQNLVAPFC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0870 263 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Lal13g0870 263 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Lal13g0870 263 CDD SANT 24 69 IPR001005 -
Lal13g0870 263 Gene3D - 22 74 - -
Lal13g0870 263 SMART sant 74 122 IPR001005 -
Lal13g0870 263 SMART sant 21 71 IPR001005 -
Lal13g0870 263 PANTHER MYB TRANSCRIPTION FACTOR 1 256 - -
Lal13g0870 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 256 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal13g0870 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Lal13g0870 263 CDD SANT 79 120 IPR001005 -
Lal13g0870 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Lal13g0870 263 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Lal13g0870 263 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Lal13g0870 263 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Lal13g0870 263 Gene3D - 79 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0870 Lal-Chr13 5961973 5963394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0870 17 263 MYB Transcription Factor Family AT3G24310 54.789 1.04e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0870 Myb_DNA-bind_6 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0870 K09422 - gmx:100813935 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0870 13 5961973 5963394 Lal13g0870 13 5961973 5963394 ECH
Lal13g0870 13 5961973 5963394 Lal24g0676 24 5021499 5023332 LSH