Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0859 ATGTTAAAATCAGTAGCATCTGTGCTGTTGGTTACATCTCTCCTCATATGTGTAACTGCATCAGATAATGGATTTCCTAGATGTAACTGTGATGATGAGGCAAGTTTGTGGACTATTGAGAGCATTCTTGAGTGCCAAAGAGTTGGAGATTTCTTGATTGCTGTGGCCTACTTCTCTATCCCTATTGAGCTGCTTTATTTTATTAGTTGCTCCAATGTCCCTTTCAAATGGGTCCTTATTCAGTTCATTGCCTTCATTGTACTATGTGGAATGACACATTTGCTGAATGGGTGGACTTATGGTCCTCACACTTTTCAACTTATGGTGGCACTCACTGTCTTCAAAATCCTCACCGCCTTGGTATCGTGTGCCACAGCCATAACCCTTGTCACACTAATTCCTTTGCTTCTCAAAGTGAAGGTCAGAGAATTCATGCTGAAGAAAAAGACGTGGGATCTTGGACGGGAGGTTGGCATTATAATGAAACAAAAGGAGGCTGCAATGCATGTGAGAATGCTTACTCAAGAGATTCGCAAGTCACTCGATAGACATACGATTCTGTACACGACTTTGGTGGAGCTGTCTAAAACACTGGGCTTGCAAAATTGCGCTGTGTGGATGCCTAATGTTGATAAGACTGAGATGAACCTCACTCATGAACTGAACGGAAGGAATTTTAACTTTTCTATACCCATTACGGATCCGGATGTTGTAAGAATTAAGGGAAGCGCTGGAGTGACTATACTTGGCCCAGATTCAGCACTTACTGGTGCAAGTAGTGGAGTTTCTGGCGAGGCAGGACCGGTTGCTGCAATCCGAATGCCAATGCTACGGGTTTGTAATTTCAAAGGAGGGACACCTGAGCTAACGCAGGCATGCTATGCAATATTAGTCTTAATTCTCCCGACTGCAGAGCTTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTCGCAGTGGCTCTATCTCATGCGGCAATCCTAGAGGAGTCCCAACTTATGAGAGAGAAGTTGGAGGAGCAAAATCGAGCTTTGCAGCAGGCAAAAAAGAATGCTATGATGGCAAGCCAGGCAAGAAACTCATTCCAGAAAGTCATGAGTGATGGGATGAGGAGGCCAATGCACTCAATCTTGGGGTTGCTCTCAATGATACAAGATGATAATTTAAAAAATGAACAGAAACTTATTGTGGATGCAATGCTTCGGACCAGCAGTGTCGTATCAAACTTGATAAATGATGCCATGGACAACTCAGCAAAAGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTGCATTCCTTGATAAGGGAAGCAACTTGCCTGGCCAAGTGCATGTGTGTTTATAGGGGCTTTGGTTTTACAGTCGAGTTCGAGAAGTCTTTGCCGGACAATGTCATGGGTGATGAGAGGAGGGTCTTCCAGGTGATTTTGCATATGGTTGGGAACCTACTGGATTCCAATTACGGGGAAGGGATTCTTGTGCTTCGGGTTTTTGCTGAAATCGGAAGTGAGGGAAGGAATGACAACAAGGGGTGGGCATCCTGGAGACCAAGCTCATCTAGTGGCGATGTAAATATTAGATTTGAGATAGGGATCAATAGTAGCAATTCTGAAGTTAGGAGCTCAGTTGCTCCAGGAATGTGGGGTAGGAAATATACAAGTGATAGAGTCGAGGGAAGATTGAGCTTCAGCATTTGCCAGAGGATAGTCCAGTTGATGCAAGGGAACATTTGGTTGGTACCAAATACTCTTGGTTTTCCTCAATGCATGGCCCTTGTTCTTCGGTTTCAATTGCGACCGTCCATTGCGATAGTCATTTCTGATCCTGGCGAGTCTTCAGAGCGCACCGATTCCAATTCCATGTTGAGAGGTTTGCAAGTTCTGTTGGCCGACAACGATGATATAAATAGAGCAGTGACCCAAAAGTTGCTTCAGAGATTAGGTTGTGCTGTTACTTGTGTTTCTTCTGGATTTGAATGTCTTACCGTCATTGGACCTGCTGGATCTTCATTTCAAGTTATTCTTTTGGATCTTAACATGCCTGATTTAGATAGCTTTGAAGTTGCCACAAGGATTCGGAAGTTCAGAAGCCGAAATTGGCCTGTGATTGTTGCGTTGACCGCAAGCACGGAAGAAGATTTGTGGGAAAGGTGCATGCAGATCGGTATTAATGGAGTTATCCGAAAACCGGTCTTGTTGCAAGGAATTGCCAGTGAGCTCAGAAGAATCCTAATGCAGGGAAATAATGTTATCTGA 2283 0.4406 MLKSVASVLLVTSLLICVTASDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLIQFIAFIVLCGMTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLVTLIPLLLKVKVREFMLKKKTWDLGREVGIIMKQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNVDKTEMNLTHELNGRNFNFSIPITDPDVVRIKGSAGVTILGPDSALTGASSGVSGEAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPTAELRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKKNAMMASQARNSFQKVMSDGMRRPMHSILGLLSMIQDDNLKNEQKLIVDAMLRTSSVVSNLINDAMDNSAKDDGRFPLEIRSFGLHSLIREATCLAKCMCVYRGFGFTVEFEKSLPDNVMGDERRVFQVILHMVGNLLDSNYGEGILVLRVFAEIGSEGRNDNKGWASWRPSSSSGDVNIRFEIGINSSNSEVRSSVAPGMWGRKYTSDRVEGRLSFSICQRIVQLMQGNIWLVPNTLGFPQCMALVLRFQLRPSIAIVISDPGESSERTDSNSMLRGLQVLLADNDDINRAVTQKLLQRLGCAVTCVSSGFECLTVIGPAGSSFQVILLDLNMPDLDSFEVATRIRKFRSRNWPVIVALTASTEEDLWERCMQIGINGVIRKPVLLQGIASELRRILMQGNNVI 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0859 760 SUPERFAMILY CheY-like 631 753 IPR011006 -
Lal13g0859 760 Pfam GAF domain 182 328 IPR003018 GO:0005515
Lal13g0859 760 ProSiteProfiles Histidine kinase domain profile. 371 586 IPR005467 -
Lal13g0859 760 Gene3D - 616 754 - -
Lal13g0859 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 757 - -
Lal13g0859 760 Pfam Response regulator receiver domain 636 743 IPR001789 GO:0000160
Lal13g0859 760 SMART gaf_1 182 338 IPR003018 GO:0005515
Lal13g0859 760 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 429 IPR036097 GO:0000155|GO:0007165
Lal13g0859 760 Gene3D - 428 606 IPR036890 -
Lal13g0859 760 SMART REC_2 634 753 IPR001789 GO:0000160
Lal13g0859 760 Gene3D - 161 329 IPR029016 -
Lal13g0859 760 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Lal13g0859 760 SUPERFAMILY GAF domain-like 185 331 - -
Lal13g0859 760 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Lal13g0859 760 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 591 IPR036890 -
Lal13g0859 760 Coils Coil 334 364 - -
Lal13g0859 760 CDD REC_ETR-like 634 749 - -
Lal13g0859 760 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Lal13g0859 760 PANTHER ETHYLENE RESPONSE SENSOR 2 11 757 - -
Lal13g0859 760 Gene3D - 330 427 - -
Lal13g0859 760 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lal13g0859 760 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0859 Lal-Chr13 5858199 5862287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0859 20 753 Miscellaneous Gene Families AT3G04580 57.584 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal13g0859 GAF 1e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0859 K14509 - gmx:100787425 1300.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0859 13 5858199 5862287 Lal13g0859 13 5858199 5862287 ECH