Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0858 ATGGCTAATCCTTGGTGGACGAGTGAGGTAGGGTTACCTAGGGTTGACCACCAAGAAATCCATCCACCTGACTTCATTACCAAAAGCCGCACTAACCTCACAATTAACGAAACTAGTATCGGTGGCAACAATCGGGATCTCGAAGACGAAGACAACAACGGAGAATATCAAGAAGCAAAACAGGGTGCAGTTGAGGTTGGAAACCGAAGACCAAGAGGGAGACCAGCTGGATCAAAGAACAAACAAAAACCACCAATCTTTGTAACAAGGGATAGCCCAAATGCCCTAAAAAGCCATATGATGGAAGTAGCTGCGGGTGCTGATGTTGCTGAATGTGTAGCAAAATTTGCAAGGAGGCGCCAGTGTGGGGTATGTGTCCTTAGTGGTAGTGGCTCTGTGGCTAATGTCACACTTAAACAACCATCTGCTCCTGGTGGTGTTGTTGCACTTCATGGCAGGTTTGAGATCCAAACCTTAACTGGTGCTTTCTTACCTGGACCTTCTCCTCCAGGATGCACTGGACTCACGGTGTACCTTAATGGAGGGCAAGCTCAGGTTTTGGGAGGATGTGTTGTTGGGTCTTTAGTTGCTGCTGGACCTGTTATTGTCATTGCTGCAACTTTCTCTAATGCAACTTATGAGAGATTACCGCTTGATGATAATGATGATGATGATGACGATGATGAGGGGCCTAGTGGCGCTGCTGCCGCGCGTGAAGGTGGCACTGGTGGATCATCGCCACCGTGGCCGCTGGGAATTGGAATCATGAGTGGGGGTCAGTTGCAACAGGGTGGGATTCCAGATCCTTCAGTGTCTCTTCCCTTGTATAACCTTCCACCAAATCTGTTGCACAATGGAGGGCAAATGGGGAATGAAACTTTTAATGCTTGGGCTGGAAGGACACCTTACTAA 912 0.4825 MANPWWTSEVGLPRVDHQEIHPPDFITKSRTNLTINETSIGGNNRDLEDEDNNGEYQEAKQGAVEVGNRRPRGRPAGSKNKQKPPIFVTRDSPNALKSHMMEVAAGADVAECVAKFARRRQCGVCVLSGSGSVANVTLKQPSAPGGVVALHGRFEIQTLTGAFLPGPSPPGCTGLTVYLNGGQAQVLGGCVVGSLVAAGPVIVIAATFSNATYERLPLDDNDDDDDDDEGPSGAAAAREGGTGGSSPPWPLGIGIMSGGQLQQGGIPDPSVSLPLYNLPPNLLHNGGQMGNETFNAWAGRTPY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0858 303 CDD DUF296 97 208 IPR005175 -
Lal13g0858 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Lal13g0858 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 220 - -
Lal13g0858 303 Gene3D - 97 223 - -
Lal13g0858 303 ProSiteProfiles PPC domain profile profile. 93 230 IPR005175 -
Lal13g0858 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 303 IPR014476 GO:0003680
Lal13g0858 303 PANTHER DNA-BINDING PROTEIN-LIKE 37 303 - -
Lal13g0858 303 MobiDBLite consensus disorder prediction 215 266 - -
Lal13g0858 303 MobiDBLite consensus disorder prediction 58 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0858 Lal-Chr13 5847994 5848905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0858 1 303 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 52.716 3.54e-87 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0858 - - lang:109335197 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0858 13 5847994 5848905 Lal13g0858 13 5847994 5848905 ECH
Lal13g0858 13 5847994 5848905 Lal24g0664 24 4911793 4912971 LSH