Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0852 ATGGATCTTGTAAGCAACAGATACTTGATCTATGTGTCACAACATGGTTCATCATCACAAGCACTTCCTCCAATCACAAATATGCACCATTCTAGGACAAGTTTCCCAATCATAGCAATTGTTATAATGGGAATATTGATCACATCTTTGTTGCTTGTGAGCTACTACATCTTTGTAATCAAGTGCTGCCTCAATTGGCACCACATTGATCTTCTAAGACGTTTCTCTTCATCATCGAGGCGCGAAGATCCATCACCTATGTACTCAAGGGCGATCGAACCTCGCGGATTAAACGAAGCAGTGATCAGATTAATCCCATTGATTCAATACAAGACACAACAAGAAGGGAGATGTAGTAGTAGTAGTAATAGTAGAGAATTTGGAGAAAGAAGCTTTTGTGAATGTGCTATTTGCTTGAATGAGTTTCAAGAAAATGAGAAGCTTAGGATTATACCAAATTGCAGCCATGTTTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCAAATTGTCCACTCTGTAGAACAAGCATTTCTTTGACAAGTACATTCCAAATTGAACAATTTCTTAACATAAGGCCTTCTTTTTCTTCTCCTCAACATCAAAACTCTCACATTAGTGGTCATGAAGATTTTGTTGTGATTGAATTAGGCAATAATGACAATGATATTGAGATACCTATAATATGTTCTAATATTACAAGTCCTTCACCAAGGAAGTTATTGAAGCAGAGAAGTGTGAACAAGAAAGGAAGGAAGATGCGTAATAAAGTGACAAGCATGGGAGATGAGTGTATTGATATTAGAACAAAGGATGATCAATTTTCAGTGCAATCTATAAGGAGGTCTTTTTCAATGGACTCATCAGGGGACAAACTCTTCTATTTGGCAGTTCAAGAAGCATTCCAATGGAACTAG 924 0.3701 MDLVSNRYLIYVSQHGSSSQALPPITNMHHSRTSFPIIAIVIMGILITSLLLVSYYIFVIKCCLNWHHIDLLRRFSSSSRREDPSPMYSRAIEPRGLNEAVIRLIPLIQYKTQQEGRCSSSSNSREFGERSFCECAICLNEFQENEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSTFQIEQFLNIRPSFSSPQHQNSHISGHEDFVVIELGNNDNDIEIPIICSNITSPSPRKLLKQRSVNKKGRKMRNKVTSMGDECIDIRTKDDQFSVQSIRRSFSMDSSGDKLFYLAVQEAFQWN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0852 307 SMART ring_2 135 176 IPR001841 -
Lal13g0852 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 182 IPR013083 -
Lal13g0852 307 CDD RING-H2_PA-TM-RING 134 177 - -
Lal13g0852 307 SUPERFAMILY RING/U-box 134 183 - -
Lal13g0852 307 PANTHER RING-H2 FINGER PROTEIN ATL16 22 305 - -
Lal13g0852 307 Pfam Ring finger domain 134 177 IPR001841 -
Lal13g0852 307 PANTHER RING-H2 FINGER PROTEIN ATL16 22 305 IPR044600 GO:0016567|GO:0016740
Lal13g0852 307 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0852 Lal-Chr13 5810788 5811711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0852 31 302 C3H Transcription Factor Family AT1G04360 48.852 1.73e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0852 - - gmx:100794749 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0852 13 5810788 5811711 Lal13g0852 13 5810788 5811711 ECH
Lal12g0735 12 5581458 5582534 Lal13g0852 13 5810788 5811711 LSH
Lal13g0852 13 5810788 5811711 Lal24g0524 24 3679273 3680154 LSH