Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal13g0852 | ATGGATCTTGTAAGCAACAGATACTTGATCTATGTGTCACAACATGGTTCATCATCACAAGCACTTCCTCCAATCACAAATATGCACCATTCTAGGACAAGTTTCCCAATCATAGCAATTGTTATAATGGGAATATTGATCACATCTTTGTTGCTTGTGAGCTACTACATCTTTGTAATCAAGTGCTGCCTCAATTGGCACCACATTGATCTTCTAAGACGTTTCTCTTCATCATCGAGGCGCGAAGATCCATCACCTATGTACTCAAGGGCGATCGAACCTCGCGGATTAAACGAAGCAGTGATCAGATTAATCCCATTGATTCAATACAAGACACAACAAGAAGGGAGATGTAGTAGTAGTAGTAATAGTAGAGAATTTGGAGAAAGAAGCTTTTGTGAATGTGCTATTTGCTTGAATGAGTTTCAAGAAAATGAGAAGCTTAGGATTATACCAAATTGCAGCCATGTTTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCAAATTGTCCACTCTGTAGAACAAGCATTTCTTTGACAAGTACATTCCAAATTGAACAATTTCTTAACATAAGGCCTTCTTTTTCTTCTCCTCAACATCAAAACTCTCACATTAGTGGTCATGAAGATTTTGTTGTGATTGAATTAGGCAATAATGACAATGATATTGAGATACCTATAATATGTTCTAATATTACAAGTCCTTCACCAAGGAAGTTATTGAAGCAGAGAAGTGTGAACAAGAAAGGAAGGAAGATGCGTAATAAAGTGACAAGCATGGGAGATGAGTGTATTGATATTAGAACAAAGGATGATCAATTTTCAGTGCAATCTATAAGGAGGTCTTTTTCAATGGACTCATCAGGGGACAAACTCTTCTATTTGGCAGTTCAAGAAGCATTCCAATGGAACTAG | 924 | 0.3701 | MDLVSNRYLIYVSQHGSSSQALPPITNMHHSRTSFPIIAIVIMGILITSLLLVSYYIFVIKCCLNWHHIDLLRRFSSSSRREDPSPMYSRAIEPRGLNEAVIRLIPLIQYKTQQEGRCSSSSNSREFGERSFCECAICLNEFQENEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSTFQIEQFLNIRPSFSSPQHQNSHISGHEDFVVIELGNNDNDIEIPIICSNITSPSPRKLLKQRSVNKKGRKMRNKVTSMGDECIDIRTKDDQFSVQSIRRSFSMDSSGDKLFYLAVQEAFQWN | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal13g0852 | 307 | SMART | ring_2 | 135 | 176 | IPR001841 | - | |
Lal13g0852 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 182 | IPR013083 | - | |
Lal13g0852 | 307 | CDD | RING-H2_PA-TM-RING | 134 | 177 | - | - | |
Lal13g0852 | 307 | SUPERFAMILY | RING/U-box | 134 | 183 | - | - | |
Lal13g0852 | 307 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 22 | 305 | - | - | |
Lal13g0852 | 307 | Pfam | Ring finger domain | 134 | 177 | IPR001841 | - | |
Lal13g0852 | 307 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 22 | 305 | IPR044600 | GO:0016567|GO:0016740 | |
Lal13g0852 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 177 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal13g0852 | Lal-Chr13 | 5810788 | 5811711 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal13g0852 | 31 | 302 | C3H Transcription Factor Family | AT1G04360 | 48.852 | 1.73e-81 | 249 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal13g0852 | - | - | gmx:100794749 | 392.504 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal13g0852 | 13 | 5810788 | 5811711 | Lal13g0852 | 13 | 5810788 | 5811711 | ECH | |
Lal12g0735 | 12 | 5581458 | 5582534 | Lal13g0852 | 13 | 5810788 | 5811711 | LSH | |
Lal13g0852 | 13 | 5810788 | 5811711 | Lal24g0524 | 24 | 3679273 | 3680154 | LSH |