Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0851 ATGGATAAAGATGGATCAAAGGGGAGGGACAAAGATGATAGTGGAGATGTCCGGTACCGAGGCGTACGCCGCCGGCCATGGGGGAAGTTTGCGGCGGAGATTCGCGACTCGGCGAGGCAGGGCCAGAGGGTGTGGCTAGGAACTTTCAACACAGCAGAGGAAGCAGCTAGAGCCTATGATAGAGCTGCTTATGCCATGAGAGGTTCATTTGCTATTCTCAATTTCCCACATGAATATTCAATGTCAGGTGTAAGTGCTGGTGGTGGTGGTTCTCATTCCTCTACTGCTTCATCCTCTTCTTCAAGGCATGGAAATGTGGAAGGAAGAGAAGTGTTTGAGATTGAGTACTTCGATGATAAATTGTTGGAAGAGATGCTTGATTATGAAGAGAAAAAGAAAAAGGGACACTAA 411 0.4745 MDKDGSKGRDKDDSGDVRYRGVRRRPWGKFAAEIRDSARQGQRVWLGTFNTAEEAARAYDRAAYAMRGSFAILNFPHEYSMSGVSAGGGGSHSSTASSSSSRHGNVEGREVFEIEYFDDKLLEEMLDYEEKKKKGH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0851 136 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lal13g0851 136 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Lal13g0851 136 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Lal13g0851 136 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Lal13g0851 136 MobiDBLite consensus disorder prediction 83 106 - -
Lal13g0851 136 MobiDBLite consensus disorder prediction 1 20 - -
Lal13g0851 136 PANTHER DNA-BINDING DOMAIN 12 130 IPR044808 GO:0003700|GO:0009873
Lal13g0851 136 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Lal13g0851 136 PANTHER OS09G0571700 PROTEIN 12 130 - -
Lal13g0851 136 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Lal13g0851 136 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Lal13g0851 136 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Lal13g0851 136 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0851 Lal-Chr13 5807276 5807686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0851 13 133 AP2-EREBP Transcription Factor Family AT3G23230 61.905 5.20e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g0851 AP2 7.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0851 - - gmx:100775830 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0851 13 5807276 5807686 Lal13g0851 13 5807276 5807686 ECH
Lal12g0734 12 5569926 5570652 Lal13g0851 13 5807276 5807686 LSH