Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0846 ATGGATTCCTCTTCCATTTTCTACTCATCAAACTCTGACTTCTCACCTGAATCCTCTTGCTTCAGCTCACCGGAGTTTTTCTCGTTGAATTTCCAGAACGATTACCTTCCATTCAACGAGAACGACTCCGAAGAGATGCTTCTCTATGGCATGATTGCCAACATTCCCCAGGAACCCACCAAGATGATCAAAGAAGAAGAGGTGAGTTCCCGGGGAAACGATGATAACACGAGGAAGGAGAAGTCGTATCGAGGTGTAAGGAGAAGGCCATGGGGAAAGTTTGCAGCCGAAATAAGAGACTCAACTAGGCATGGAATAAGAGTGTGGTTAGGGACATTTGATAGTGCAGAAGCTGCAGCTTTAGCTTATGATCAAGCTGCTTTTTCCATGAGGGGTTCTGCTGCTATACTCAACTTCCCTATTGAGATTGTTAAGGAATCACTTAGGGAAATGAATTATGGGTCTGAAGATGGGTGCTCCCCTGTTATTGCTCTCAAGAGGAAGCACTCATTGAGAAGGAAAATGGGTGTCAAGAAGAATATAGATAGCCATGTTAGGGTAAACAATGCAGTGGTGTTTGAAGATCTAGGTGCTGATTATTTAGAACAATTGTTGATGTCCTCTGATGAAATTCCTAATCCTTGTTGA 648 0.4321 MDSSSIFYSSNSDFSPESSCFSSPEFFSLNFQNDYLPFNENDSEEMLLYGMIANIPQEPTKMIKEEEVSSRGNDDNTRKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPIEIVKESLREMNYGSEDGCSPVIALKRKHSLRRKMGVKKNIDSHVRVNNAVVFEDLGADYLEQLLMSSDEIPNPC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0846 215 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Lal13g0846 215 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lal13g0846 215 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Lal13g0846 215 PANTHER DNA-BINDING DOMAIN 29 207 IPR044808 GO:0003700|GO:0009873
Lal13g0846 215 SUPERFAMILY DNA-binding domain 82 142 IPR016177 GO:0003677
Lal13g0846 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 29 207 - -
Lal13g0846 215 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Lal13g0846 215 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Lal13g0846 215 Gene3D AP2/ERF domain 81 143 IPR036955 GO:0003700|GO:0006355
Lal13g0846 215 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0846 Lal-Chr13 5791537 5792184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0846 36 209 AP2-EREBP Transcription Factor Family AT3G23240 65.217 5.36e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal13g0846 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0846 K14516 - pvy:116137607 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0846 13 5791537 5792184 Lal13g0846 13 5791537 5792184 ECH
Lal12g0733 12 5555829 5556503 Lal13g0846 13 5791537 5792184 LSH