Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0843 ATGGAACGTGGGGTTCTTGATGGAATCATCAATAAGCTTCTTGAAGTTAAAGATAAACCCGGGAAGCAGGTTCAGCTTTCTGAGGCTGAGATCATGAAGCTTTGTGTTGTCTCTAAGGATATCTTCTTGAAGCAGCCCAACCTCTTGGAACTCGAGGCACCTATTAAGATCTGTGGAGATATCCATGGCCAATATTCCGATCTATTGAGACTTTTCGAGTATGGTGGATTTCCCCCTCGTTCCAATTACTTATTTTTGGGAGATTATGTTGATCGTGGAAAGCAAAGTTTGGAGACAATATGCCTACTTCTGGCATATAAAATAAGATATCCTAAAAACTTTTTCCTCCTTAGAGGCAATCATGAATGCGCTTCAATTAATCGTATCTACGGATTTTATGACGAATGTAAACGAAGATTCAATGTCAAGCTGTGGAAACTGTTTACAGATTGTTTCAATTGTTTGCCTGTAGCAGCTATCATTGATGAAAAAATAATCTGTATGCATGGTGGACTATCTCCTCAATTATACAATTTAAATCAGATACGAACTTTACCGCGTCCGATTGAAGTCCCTGAAACTGGTCTGCTATGTGATCTTCTATGGTCTGATCCTAGTAGAGACATTAAGGGCTGGGGAGGGAACGAACGCGGAGTTTCTTATACTTTTGGTGCTGACAGGGTTATAGAATTTCTTCAAAAGCATGATCTTGAATTAGTTTGCAGGGCACACCAGGTTGTGGAAGATGGATATGAATTCTTTGCTAATAGACAACTTGTAACTATATTTTCAGCACCTAACTATTGTGGAGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTTGTGTGCTCTTTTCAAATATTGAAGCCCCAAGATAAAAGGTTAAAGTTTGGCTTTGGGAGAACAACACTGAAGTCTAGTGCTGCAACAAATTTCAAGGTCTAA 957 0.3939 MERGVLDGIINKLLEVKDKPGKQVQLSEAEIMKLCVVSKDIFLKQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIRYPKNFFLLRGNHECASINRIYGFYDECKRRFNVKLWKLFTDCFNCLPVAAIIDEKIICMHGGLSPQLYNLNQIRTLPRPIEVPETGLLCDLLWSDPSRDIKGWGGNERGVSYTFGADRVIEFLQKHDLELVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLVCSFQILKPQDKRLKFGFGRTTLKSSAATNFKV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0843 318 SUPERFAMILY Metallo-dependent phosphatases 16 297 IPR029052 -
Lal13g0843 318 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 314 - -
Lal13g0843 318 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 314 - -
Lal13g0843 318 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Lal13g0843 318 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Lal13g0843 318 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Lal13g0843 318 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Lal13g0843 318 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Lal13g0843 318 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Lal13g0843 318 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Lal13g0843 318 Gene3D - 2 305 IPR029052 -
Lal13g0843 318 CDD MPP_PP1_PPKL 5 294 - -
Lal13g0843 318 SMART pp2a_7 26 296 IPR006186 GO:0016787
Lal13g0843 318 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Lal13g0843 318 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Lal13g0843 318 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0843 Lal-Chr13 5760020 5762953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0843 33 242 Calmodulin-binding Proteins AT5G63870 31.600 5.15e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0843 K06269 - gmx:100791655 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0843 13 5760020 5762953 Lal13g0843 13 5760020 5762953 ECH