Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0831 ATGGTAAAGGTATTCATTACACTCTTATTGTTTTCATTTTTCTCAATAGCTAAATCAAGAAGCACACCATCCTCTAACAGCAACATAGATTGGTGGTGCAACATAACCCCACACCCTGAACCATGCAAACACTACATTGGTCAAATCAACCACTATCCCAATATCAAACACAAATCTGAGTTCAGGGTAATGCTTGTTCAATTAGTCTTAAAGCAAGTGGTTATCATGCAAAGTGAAGCACAAGATTTTGAACAAAACTTGGTAACCAAGAAGCATAAAGTAGTACATAATGATTGTTTGAAGCTCTATGAGAACACCATTTTTCATCTCAATCGTACCCTTGAAGGCCTACATGTGAAGAAAACTTGTTCACCAGTTGATACACAAACTTGGCTCAGTACTACTCTTACAAATATCCAAACTTGTCAAACCGGGGCCACAGATCTCAGTGTTGAAGATTTCAAGGTGTCAAAATTGAGCAACAATGTTACTAAGATGATAAGGAACAGCTTAGCCATAAACATGGATTTCATGAAACAGAATGGAGATAATCACAAAGGAGAAACAAAAGAAGCATTCCCAAGTTGGTTTTCTAGGCATGACAGAAAGCTTTTGCAGTCTAAATCTTCAATAAAGGCACATATTGTTGTTGCAAAAGATGGTTCAGGGCATTTCAAGACTGTCCAAGAAGCTCTGAATTCAGCATCAAATAGAAAAACAAAGAGAAGGTTTATCATACATGTGAAAAAAGGGGTATATGCAGAGAATATTGAGGTGAAGAAAAACAATGATAACATAATGCTTATTGGTGATGGAATGGCAAAGACTATAATAACAAGTCACTTAAGTGTTAAAGATGGTTTTACTACTTATAGTTCAGCAACAGCAGGCATAGATGGCCTTCATTTCATAGCACGTGACATTACCTTCCAAAACACTGCTGGACCTCACAAGGGTCAAGCCGTGGCGCTCCGATCGGCCTCCGATCTCTCAGTTTTTTACCGGTGTGCTATAGCAGGTTACCAAGACACCCTAATGGCTCATGCACAACGTCAATTTTATAGACAATGCTACATCTATGGGACAGTAGATTTCATATTTGGTAATGCTGCAGTAGTGTTCCAAAATTGTAACATTTTTGCAAGAAAGCCTTTAGATGGCCAAGATAACATGATTACAGCACAAGGTAGAGGAGATCCATTTCAAAACTCTGGAATTTCAATCCACAATTGTCAAATAAAAGCTGCACAGGACCTTAAGCCAGTTGTTGATAAATTCAAAACCTTTTTGGGTAGGCCATGGCAACAATACTCAAGAGTAATGGTAATGAAAACTTTCATTGACACTTTGGTGAATCCATTGGGTTGGTCTCAATGGGGTGATAGTAACTTTGCTCAAGATACATTATATTATGGAGAGTATGAAAATTATGGACCAGGTTCATCTACAAGTAACAGAGTAAAATGGCCAGGTTTTCATGTCATAAAAAACTCTGCTGAAGCATCTCATTTCACAGTCACTTCCCTCCTTTCTGGCCATACATGGTTGCCTACATCCACTGTGCCATTTACCTCTGGCCTTTGA 1584 0.3838 MVKVFITLLLFSFFSIAKSRSTPSSNSNIDWWCNITPHPEPCKHYIGQINHYPNIKHKSEFRVMLVQLVLKQVVIMQSEAQDFEQNLVTKKHKVVHNDCLKLYENTIFHLNRTLEGLHVKKTCSPVDTQTWLSTTLTNIQTCQTGATDLSVEDFKVSKLSNNVTKMIRNSLAINMDFMKQNGDNHKGETKEAFPSWFSRHDRKLLQSKSSIKAHIVVAKDGSGHFKTVQEALNSASNRKTKRRFIIHVKKGVYAENIEVKKNNDNIMLIGDGMAKTIITSHLSVKDGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAIAGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQDNMITAQGRGDPFQNSGISIHNCQIKAAQDLKPVVDKFKTFLGRPWQQYSRVMVMKTFIDTLVNPLGWSQWGDSNFAQDTLYYGEYENYGPGSSTSNRVKWPGFHVIKNSAEASHFTVTSLLSGHTWLPTSTVPFTSGL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0831 527 Pfam Pectinesterase 214 512 IPR000070 GO:0030599|GO:0042545
Lal13g0831 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 177 IPR035513 -
Lal13g0831 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Lal13g0831 527 PANTHER PECTINESTERASE 4 526 - -
Lal13g0831 527 SUPERFAMILY Pectin lyase-like 211 526 IPR011050 -
Lal13g0831 527 SMART PMEI_2 24 173 IPR006501 GO:0004857
Lal13g0831 527 Gene3D - 207 527 IPR012334 -
Lal13g0831 527 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Lal13g0831 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 174 IPR006501 GO:0004857
Lal13g0831 527 CDD PMEI-like_3 31 179 - -
Lal13g0831 527 PANTHER PECTINESTERASE 4 526 - -
Lal13g0831 527 Pfam Plant invertase/pectin methylesterase inhibitor 28 173 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0831 Lal-Chr13 5655738 5657321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0831 24 527 Carbohydrate Esterase AT3G47400 55.706 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0831 K01051 - gmx:100806133 792.341