Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0830 ATGAGAGTTAAAAGTTGGATAAGTAAGAGGAAGTTTAGCATTAGAGGGAAACTGAGAAAGATGAGTAAGTGTATATGTTCTTCCATGGAACAGTTTAAGGTTATTGATGATATAAGTTCTTCATCAGAGTCATTGGCAACCAAAGACTATTCAGCCAGTGGTGGTGCTGGTTATTCCTCCCATCCTGGTGAAACAGAAACAAAGGTGGAAAATAGAAACATTGAAGAAGCAGAATGGTCTCTTCGCGAAAGTGGTTATTTAAACTACGAGGAAGCTAGAGCACTATTAGGAAGACTGGAGTATCAGAAAGGTAATATTGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGATGCTGTTATTCCCAAGATGAAAATTTCCATATCTAGAAGACATGCATCTAATAGATCCCTTTCCCAAAGTGATGCAATGCCTCCTATGTCAATTCATGCTGTTAGTTTACTTCTTGAAGCTGTTATTCTGAAGGCAAAATCATTGCAGACTCTTGGAAGGTTTCAAGGTTCTGCTCAATCATGCAAAACTATTCTAGACACTGTTGAATCGGCATTACCAGAAGGCTTGCCTGAAAACTTTGTTTCAGACAGTAAATTACACGAGACTCTAATAAATGCTGTAGAACTGCTTCCCGAGTTGTGGAAACTTGCAGGTTCTCCTCAAGATGTCATCACGTCATATAGGCGTTCGTTGCTTTATCACTGGAATCTTGACATTGAAACCATTTCAAGAATACAAAAGGACTTCGCTTTGTTTCTTTTGTATGGTGGTTGCGAAGCAAGCCCTCCTTCTTTACGCTCTCAGTTGGATGGTTCGTATGTTCCAATAAACAATATAGAAGAAGCTGTTCTTCTGCTTCTGATTCTGCTAAGAAAATCTGCTCTTGGAAGCATTGTTTGGGACCCTTCAATAATTGATCACCTTTCTTTCGCTCTAAGTGTTTCTGGTGAATTCATGACTCTGGCTAAACATATTGAGGAAATGCTTCCAGAAACAATGGAGAGAAAAGACAGATATTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTAATTATATGATTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAACTCGGACACCATACTAGAATTACTTCTAGCTTCAAAAATTTGTGGAGACAACATGGTTTGTGTTGAAGATGGGATTAAATATGCTATCAAAGCCATCTCTCAGTTGCATGGAAAATGCATGCAGATGTTAGCTATTGCAAATTGCATACTAGGTGTTCTACTGTCCTCAAAATCCAGGTTAATTGGTTTTGAATCAGAGAAGGTTTTGATGCAGTCTGAAGCACTCAGTGCTCTAGAAACTTCTGAGAGAATGATGAGGGAAAGTGATCCATACATTGTCCTTAATCTTTGTTTAGAATATGCTGAGCAGAGGAAGTTGAGCATTGCTTTTTATCATGCAAAGAAACTGGTTGCCCTTGAAGGTGGATCTAGTATTACCGGATATATACTAATGGCACGAATTTTATCGGCTCAAAAGAATTTTGTAGATGCAGAGATTGTTATTGATGCTGCTATAGATCAAAGTGGAAAAAGGGAACAAGGAGTGTTGTTGAGAACTAAAGCTAAACTACAGATCGCGCAGGGAAAATTAAAGAATGCAATTGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTACAGAAAAAAAATTCAGTTATTTCAAGTAAGGTTATGAAGAATAAGGGAAATTGCGACAGAAGACTGGAAATGGAAGTTTGGCATGATTTAGCCAACGTGTACACAGCGTTATCAAGGTGGCAGGATGCCGAAGTTTGTCTTGCAAAATCTCAAGCCATTGATCCCTATTCTGCTTCTAGATGGCATTCCACAGGCCTACTTTTTGAAGCCAGAGGACTTCATCAAGAAGCTATGAAATCATTTAGAAAAGCATTAGATATCGATCCGAACCATATCCCAAGTTTGATTTGCACTGCTGGTGTTATGAGACATCTTGGTTGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCACTATGGCTTGACAGAACAAACCCATCTACTTGGTACAATCTTGGAATGCTCTACAAAGATGATTTTGGGATATCGTCGCTCGAAGCTGCTGAATGCTTTCAGGCAGCAGCTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAG 2211 0.3858 MRVKSWISKRKFSIRGKLRKMSKCICSSMEQFKVIDDISSSSESLATKDYSASGGAGYSSHPGETETKVENRNIEEAEWSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIDAVIPKMKISISRRHASNRSLSQSDAMPPMSIHAVSLLLEAVILKAKSLQTLGRFQGSAQSCKTILDTVESALPEGLPENFVSDSKLHETLINAVELLPELWKLAGSPQDVITSYRRSLLYHWNLDIETISRIQKDFALFLLYGGCEASPPSLRSQLDGSYVPINNIEEAVLLLLILLRKSALGSIVWDPSIIDHLSFALSVSGEFMTLAKHIEEMLPETMERKDRYYTLALCYCGEGNYMIALDLLRNFLNNRENSDTILELLLASKICGDNMVCVEDGIKYAIKAISQLHGKCMQMLAIANCILGVLLSSKSRLIGFESEKVLMQSEALSALETSERMMRESDPYIVLNLCLEYAEQRKLSIAFYHAKKLVALEGGSSITGYILMARILSAQKNFVDAEIVIDAAIDQSGKREQGVLLRTKAKLQIAQGKLKNAIETYTFLLAVLQVQKKNSVISSKVMKNKGNCDRRLEMEVWHDLANVYTALSRWQDAEVCLAKSQAIDPYSASRWHSTGLLFEARGLHQEAMKSFRKALDIDPNHIPSLICTAGVMRHLGCQSSSIVRSLLTDALWLDRTNPSTWYNLGMLYKDDFGISSLEAAECFQAAAFLEESSPIEPFR 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0830 736 ProSiteProfiles TPR repeat profile. 625 658 IPR019734 GO:0005515
Lal13g0830 736 SMART tpr_5 625 658 IPR019734 GO:0005515
Lal13g0830 736 SMART tpr_5 499 532 IPR019734 GO:0005515
Lal13g0830 736 SMART tpr_5 535 568 IPR019734 GO:0005515
Lal13g0830 736 SMART tpr_5 591 624 IPR019734 GO:0005515
Lal13g0830 736 PANTHER PROTEIN NPG1 13 736 IPR043376 -
Lal13g0830 736 MobiDBLite consensus disorder prediction 51 70 - -
Lal13g0830 736 Gene3D Tetratricopeptide repeat domain 68 582 IPR011990 GO:0005515
Lal13g0830 736 Gene3D Tetratricopeptide repeat domain 583 732 IPR011990 GO:0005515
Lal13g0830 736 PANTHER OS10G0471400 PROTEIN 13 736 - -
Lal13g0830 736 SUPERFAMILY TPR-like 334 558 IPR011990 GO:0005515
Lal13g0830 736 Pfam Tetratricopeptide repeat 628 658 IPR019734 GO:0005515
Lal13g0830 736 SUPERFAMILY TPR-like 537 706 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0830 Lal-Chr13 5648988 5653591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0830 14 736 Calmodulin-binding Proteins AT4G28600 50.951 0.0 684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0830 13 5648988 5653591 Lal13g0830 13 5648988 5653591 ECH