Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0817 ATGGATCGTGTAATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGAGCTGGATCGTTTGGAGAACTTTATTTGGGTGTTAATGTACAAACTGGAGAGGAAGTGGCTGTCAAATTGGAACCTGCGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACTGGAATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTAATTGACCTTCTTGGACCAAGTCTTGAAGATTTGTTTAACTATTGCAACCGGAAATTATCTCTGAAGACAGTTCTGATGCTTGCAGATCAGCTAATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATATGTAATTGATTATGGCCTTGCAAAAAAGTATAGGGATCTTCAAACACATAAGCATATACTATACAGGGAAAATAAGAACCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACCCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGCTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGTATGAAAGGTGGAACTAAAAAGCAAAAGTATGACAAGATAAGTGAAAAGAAGATGCTTACTCCGATAGAGGTATTATGCAAGTCATATCCATCGGAATTCACATCTTACTTCCACTACTGCCGATCGTTGAGGTTCGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTTCGCGACCTATTCATTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTAAAGTATCCACAAATTGGATCCAGTTCTAGAGCACGACCAAGCGGGAAGCCAGCCATAAACCTGGGACCTGGACTATCAGGAGTGAGAGTAGAACGGCCTTCAGGTGTGCCGGAGGTCCGGGATAGATTGTCTGGTGCACTCGAGGAGTTTGCAAGAAGGAATAGACCGAATAGCTCCAGGCTTGGGCTGCATGGTGATAATTCTAGGCATAGGTCTTCAGATGATGTGCCATCTTCCAAAGATGTGCAAGCTGATTCTGAGAGGCCTCGTAGCTCTTCTCGTACTGGTAGTACCTCAAAACGGCCCGTCGTATCAAGCAGCCGACCAAGCACATCTGGTGAACCTAATAAAAGCCATTCTGGTCGACTGGTCTCAAGCAGTGGTCGTCTGTCTACAACTCAGAGGATTCTACCAGGTTTAGATTCCAAAACATTCTTCACCCGTGCTTCAGGCTCAAGAGGTGGTCGCGATGATGCACTTAGGAGCTTTGAACTCCTGTCAATTGGTACAGGAAAAAGGAAATGA 1404 0.4338 MDRVIGGKFKLGRKIGAGSFGELYLGVNVQTGEEVAVKLEPAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHILYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKGGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPAINLGPGLSGVRVERPSGVPEVRDRLSGALEEFARRNRPNSSRLGLHGDNSRHRSSDDVPSSKDVQADSERPRSSSRTGSTSKRPVVSSSRPSTSGEPNKSHSGRLVSSSGRLSTTQRILPGLDSKTFFTRASGSRGGRDDALRSFELLSIGTGKRK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0817 467 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal13g0817 467 Gene3D Transferase(Phosphotransferase) domain 1 1 312 - -
Lal13g0817 467 MobiDBLite consensus disorder prediction 327 348 - -
Lal13g0817 467 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 454 - -
Lal13g0817 467 MobiDBLite consensus disorder prediction 300 451 - -
Lal13g0817 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal13g0817 467 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lal13g0817 467 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0817 467 MobiDBLite consensus disorder prediction 382 442 - -
Lal13g0817 467 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0817 467 PANTHER CASEIN KINASE-RELATED 1 454 - -
Lal13g0817 467 MobiDBLite consensus disorder prediction 357 381 - -
Lal13g0817 467 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0817 467 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0817 Lal-Chr13 5492538 5497947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0817 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 1.18e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal13g0817 Pkinase 6.8e-26 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0817 13 5492538 5497947 Lal13g0817 13 5492538 5497947 ECH
Lal12g0713 12 5403266 5408777 Lal13g0817 13 5492538 5497947 LSH
Lal13g0817 13 5492538 5497947 Lal24g0636 24 4674092 4679614 LSH