Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0813 ATGGTGAGGGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACTAGAGAGGAAGATCAAATCCTCATTTCTTACATCCAAAAACATGGCCATAGTAATTGGCGTGCACTTCCTAAGCAAGCAGGGCTATTAAGATGTGGGAAAAGCTGCAGATTGCGTTGGACAAACTATTTGAGGCCTGATATAAAGAGAGGAAATTTCACAAATGAAGAGGAGGAAACTATCATTCAGCTGCATCAGATGTTAGGGAACAGGTGGTCAACTATTGCAGCCAAATTACCGGGAAGAACTGATAATGAAATTAAAAATGTGTGGCACACACATTTGAAGAAGAAGTTACTGAAAACAAATCAACTCAATTCAGATATCAAAATTAGAGTCTCTAGACTAAAAATAAAACGCTCTTATTCGAATTCGAGCACCATAACTCAATCTGACCCTGACACATCAACATGCACCACTTCTAGTGTTTTTTCATATGCCATAGTTGATGAAAGCAAAAATATCAAGATTGAAGACTTAGAGTCTCTAGACACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAAAATGCAACAATGGATGATGAAACCCCTACCACAATGGTTCAATCAAAATCTTTGAATATCTCAAATGAGTTACCACTTCAATGCCCATTTAATAATTATGAGGAAAGTTTCCAACAGAGTAATGGTTATATTTCAAACTTGGATGATGGCATGGATTTCTGGTATGACATATTTACCAGAACTGGTGATTCAATAGAATTGCCAGAGTTCTGA 792 0.375 MVRAPCCEKMGLKKGPWTREEDQILISYIQKHGHSNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFTNEEEETIIQLHQMLGNRWSTIAAKLPGRTDNEIKNVWHTHLKKKLLKTNQLNSDIKIRVSRLKIKRSYSNSSTITQSDPDTSTCTTSSVFSYAIVDESKNIKIEDLESLDTMPEIDESFWSENATMDDETPTTMVQSKSLNISNELPLQCPFNNYEESFQQSNGYISNLDDGMDFWYDIFTRTGDSIELPEF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0813 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal13g0813 263 CDD SANT 69 112 IPR001005 -
Lal13g0813 263 CDD SANT 16 61 IPR001005 -
Lal13g0813 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal13g0813 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Lal13g0813 263 SMART sant 13 63 IPR001005 -
Lal13g0813 263 SMART sant 66 114 IPR001005 -
Lal13g0813 263 Gene3D - 11 67 - -
Lal13g0813 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal13g0813 263 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal13g0813 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal13g0813 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal13g0813 263 Gene3D - 69 116 - -
Lal13g0813 263 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 255 - -
Lal13g0813 263 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0813 Lal-Chr13 5469334 5471879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0813 1 263 MYB Transcription Factor Family AT2G31180 49.630 1.16e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0813 Myb_DNA-binding 6.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0813 K09422 - gmx:100807569 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0813 13 5469334 5471879 Lal13g0813 13 5469334 5471879 ECH
Lal13g0813 13 5469334 5471879 Lal24g0631 24 4637700 4643328 LSH