Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0811 ATGCATGCATACTTGGAAGATCGAAAGTTACAACACTTAAGGGAGAAAATTTTCCCCAAGAAAGGAAAAAATGCAAAGGCCAACAAGATACATAATCACAGTGGTGGTAAGAAAGAGTCAGAATCTGCCAAACTTAAAGGGTCTCAAAGAAAAAAAGAAGGAACAGTCAAATTCACAAGGGACTTAAATCTTCCACCACCACCACCTATGTTTGGTTCAGGAAGTGAAAGCAGCCACAAATTTGGGAATATTCCATCTCAACATGAGATTGGTTCAAGCAGTGAAAGCAACAAAGTCTGGTTATCCTTGGTTGCTTCTGAAGACAGGGATGGTAGTTTAGCTGTTTCCTATATTGAGAAGTATGTCATCAAAAAACTTGGTCTTCCAAATAATACTGAGGTGGAGATGCAATTATGGGGTCAGCCAGTTCCTTCTTCATGCAAGCTGCAAAACTTATTAGAAATGTGGTTGCAAACAATGCCAAAGAATGAGAAGATTCATACATCTGTTGGAAGCTCAGCTGAGGATTTTGTTATGGTCCTTTCATATGGACTAAAGGGTTGA 564 0.3918 MHAYLEDRKLQHLREKIFPKKGKNAKANKIHNHSGGKKESESAKLKGSQRKKEGTVKFTRDLNLPPPPPMFGSGSESSHKFGNIPSQHEIGSSSESNKVWLSLVASEDRDGSLAVSYIEKYVIKKLGLPNNTEVEMQLWGQPVPSSCKLQNLLEMWLQTMPKNEKIHTSVGSSAEDFVMVLSYGLKG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0811 187 MobiDBLite consensus disorder prediction 32 58 - -
Lal13g0811 187 MobiDBLite consensus disorder prediction 1 22 - -
Lal13g0811 187 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 78 185 - -
Lal13g0811 187 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 78 185 IPR044807 GO:0004842
Lal13g0811 187 MobiDBLite consensus disorder prediction 1 95 - -
Lal13g0811 187 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0811 Lal-Chr13 5460658 5462631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0811 109 186 C3H Transcription Factor Family AT3G23060 44.872 1.61e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0811 K16277 - pop:7467526 105.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0708 12 5341956 5343928 Lal13g0811 13 5460658 5462631 LSH
Lal13g0811 13 5460658 5462631 Lal24g0628 24 4611273 4613190 LSH