Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0810 ATGACAAATGAAATGGTGAAGGCACAGAGAAATAAGGCAAAGGTGTCAACACCATTGACATGTTTTTTATGTAATCAATTGTTCACAAATGCCACTACTGTGGTTGAATGCTTGCATACTTTTTGCAGGGAATGCATAGAGAAGAAGATAACGGATGAGAAAGTAACACACTGTCCAGTATGCAATACAGACTGGGGTTATCTTCCACAGGATAAATTAAAAGCAGACCACAGACTGCAAGGTTTGAGGGACAGAATTTTCCCCTCTAAAGGAAAAAATGGCAAGGTTCCTGAAAATGTGCATCCGGTTACATTGCCAACAAAGTCAAAGGAGGATTCTCTATCTTCACTGAAGGCCAGTGCAAGAAAAGCAAAAACTGCTGCAAAACAAGTTGTCATTCCAAGAGACTCAGATATCTCTTATGCGAAACATGATAAAGTGGTTCAGAACGATGGAAGACACCGTGGGATAGAAATTTTCGATGAAGTTTCTACAATTCTATCTGCAAGAAGAGCAAAAGTTGCTGCAAGAAAGAAATTTATTCAGAGAGAATCCACTCCTCCTAGTCAACCTGACAAAGTAACAGGAGATGAAAAGGAAGATTATGGTCATTCCCGGTCAAATGGAACTTCCAAAACCAGAGTTCAGAACTCTTCACAACCAGAATCTAGGAAGCAAATTGTGGCTAAGAAAACTTGTGAGGGTACTTCTGAGTTATGTAAAGAAAAGGTTGATATGTCTGCGCCATTAACTTCCCTGGTAGAAGCTGTAAGAAGAAATAAGTCAAGTAATAAGTCTCCAATGAAAGAAGTTGCTGCGATTTCTGTGCCTATAGACTCTAGTGACAATAATTCTCAGGGGCCTAAGGTTCAAGTTAAGAAACATTGTCAGGCTGGTGAAAAGAAAGAGTCAAGTTATGCCAAACTTAAAAGGTTGCAGGGCACTCAAGAAAGAACAGTCAAATTATCGGGGGATGTGAATTTTCGAGTACCAGCACCAGGGATTGGTTCAAGCAGTCAAAGCAACAACAACTTTGGGATTCTTCTATCTCAACCTGTGAATGGTTCAAGCGGTAAAAGCGACAAAATATTTGGCAGTCCAGTCTGGTTCTCCTTGGTTGCTTCCGAAAACAACGAAGTAGGTGCAAGATTGGCTCAAATATCTACCCGCTTCATAAGAGTCAAGGATGGTAGTTTACCTGTCTCTTACATCGAAAAGTATATCGTGAAAAAGCTCGGCCTTCCTAGTGATGCTGAGGTGGAGATCTTACTATGGGGTCAGCCAGTTTTATCTTCATGGAAACTACAAAACTTAGTAGAGTTGTGGTTGCAAACAATGCCAAAGGATGAGAAGATTCATACATTTGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATATGGACTAAAAGCTTGA 1422 0.403 MTNEMVKAQRNKAKVSTPLTCFLCNQLFTNATTVVECLHTFCRECIEKKITDEKVTHCPVCNTDWGYLPQDKLKADHRLQGLRDRIFPSKGKNGKVPENVHPVTLPTKSKEDSLSSLKASARKAKTAAKQVVIPRDSDISYAKHDKVVQNDGRHRGIEIFDEVSTILSARRAKVAARKKFIQRESTPPSQPDKVTGDEKEDYGHSRSNGTSKTRVQNSSQPESRKQIVAKKTCEGTSELCKEKVDMSAPLTSLVEAVRRNKSSNKSPMKEVAAISVPIDSSDNNSQGPKVQVKKHCQAGEKKESSYAKLKRLQGTQERTVKLSGDVNFRVPAPGIGSSSQSNNNFGILLSQPVNGSSGKSDKIFGSPVWFSLVASENNEVGARLAQISTRFIRVKDGSLPVSYIEKYIVKKLGLPSDAEVEILLWGQPVLSSWKLQNLVELWLQTMPKDEKIHTFVGSSAKDFVMVLSYGLKA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0810 473 MobiDBLite consensus disorder prediction 208 226 - -
Lal13g0810 473 MobiDBLite consensus disorder prediction 88 120 - -
Lal13g0810 473 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Lal13g0810 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 127 IPR013083 -
Lal13g0810 473 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Lal13g0810 473 SUPERFAMILY RING/U-box 17 80 - -
Lal13g0810 473 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 470 IPR044807 GO:0004842
Lal13g0810 473 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
Lal13g0810 473 SMART ring_2 21 61 IPR001841 -
Lal13g0810 473 MobiDBLite consensus disorder prediction 193 207 - -
Lal13g0810 473 MobiDBLite consensus disorder prediction 177 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0810 Lal-Chr13 5451112 5455619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0810 1 395 C3H Transcription Factor Family AT2G30580 30.024 6.57e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0810 K16277 - jre:108989436 278.87