Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0808 ATGGCAACAACTTTGTTGGGAAAGGAGAATGGTTTGAACCTGAAGGAAACTGAGCTTTGCCTTGGTTTGCCTGGTGGTGGTGGTGGCGGCGGCGGCGGCGTCTCTGAGGTGGAAACTCCAAGGGCCAATGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCCTTCCAGGGAAGATCTGAATGATAATATGAAGAATGACTCCAAGGAGAAGACCCTCCTTAAGGACCCTGTCAAGCCACCAGCTAAGGCTCAAGTAATTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACTTGATGGCACAAAAGGTGAACTCTGAGGATAGCACAGAGAAGACAAGTAGTGGTGCATTTGTGAAGGTTTCAATGGATGGTGCACCTTACCTACGCAAGGTGGACTTAACAGTCTACAAATGCTACCAAGAATTAGCTGATGCTTTAGCCAAAATGTTCAGCTCCTTCACAATAGGTGATTATGGGACCCAAGGAATGATAGACTTCATGAATGAAAGTAAGTTGATGGATCTTCTGAACAGCTCTGAATATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGCAGATGTTTGTTGGGTCATGCAAGCGTCTGCGAATAATGAAAGGGTCAGAAGCAATTGGGCTTGCCCCAAGAGCCATGGAAAAATGCAAACGCAGAAGCTGA 717 0.47 MATTLLGKENGLNLKETELCLGLPGGGGGGGGGVSEVETPRANGKRGFSETVDLKLNLPSREDLNDNMKNDSKEKTLLKDPVKPPAKAQVIGWPPVRSYRKNLMAQKVNSEDSTEKTSSGAFVKVSMDGAPYLRKVDLTVYKCYQELADALAKMFSSFTIGDYGTQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWQMFVGSCKRLRIMKGSEAIGLAPRAMEKCKRRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0808 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 231 IPR003311 GO:0005634|GO:0006355
Lal13g0808 238 Pfam AUX/IAA family 42 229 IPR033389 -
Lal13g0808 238 Gene3D - 114 232 - -
Lal13g0808 238 ProSiteProfiles PB1 domain profile. 120 220 IPR000270 GO:0005515
Lal13g0808 238 SUPERFAMILY CAD & PB1 domains 116 219 - -
Lal13g0808 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 8 231 - -
Lal13g0808 238 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0808 Lal-Chr13 5434055 5436519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0808 113 228 B3 DNA Binding Superfamily AT4G23980 31.897 2.07e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal13g0808 AUX_IAA 7.1e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0808 K14484 - gmx:100810762 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0706 12 5313586 5316455 Lal13g0808 13 5434055 5436519 LSH
Lal13g0808 13 5434055 5436519 Lal24g0627 24 4599132 4602584 LSH