Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0807 ATGGAAAGCAAAGTGGTATATGAGAATGATCTTAATTTCAAGGCAACAGAACTTAGACTAGGGCTGCCAGGGACAGAAGAGAATGAGGAAAAAGCAAAGTCTAGTGTTAGAACCAACAAAAGGCCATTGATTGAAACTTCTGAGGAGTGTGGTTCAAAGGGCTCTAATGCTCCTAAAAAACATGTGAACAATGATGTAGCCCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCTTACAGGAAAAACAGCATTCAAGAGGCTGAGTCTGAGGGTGCTGGGATCTATGTGAAAGTGAGTATGGATGGAGCACCTTACCTCAGAAAGATAGATTTGAGGGTTTATGGAAGCTATCCACAACTCCTCAAAGCTTTAGAAAACATGTTCAAGTTAACAATAGGTGAATACTCTGAGAAAGAAGGTTATAAGGGATCTGAGTTTGCACCTACATATGAAGACAAGGATGGTGACTTGATGCTAGTTGGAGATGTTCCATGGGATATGTTTGTGACTTCATGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCAAGAGGTTTGGGTTGTGGTGTATGA 585 0.4154 MESKVVYENDLNFKATELRLGLPGTEENEEKAKSSVRTNKRPLIETSEECGSKGSNAPKKHVNNDVAPPSKAKIVGWPPIRSYRKNSIQEAESEGAGIYVKVSMDGAPYLRKIDLRVYGSYPQLLKALENMFKLTIGEYSEKEGYKGSEFAPTYEDKDGDLMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0807 194 MobiDBLite consensus disorder prediction 23 47 - -
Lal13g0807 194 Gene3D - 91 194 - -
Lal13g0807 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 191 IPR003311 GO:0005634|GO:0006355
Lal13g0807 194 ProSiteProfiles PB1 domain profile. 97 184 IPR000270 GO:0005515
Lal13g0807 194 MobiDBLite consensus disorder prediction 21 68 - -
Lal13g0807 194 Pfam AUX/IAA family 55 191 IPR033389 -
Lal13g0807 194 SUPERFAMILY CAD & PB1 domains 93 183 - -
Lal13g0807 194 PANTHER AUXIN-INDUCED PROTEIN 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0807 Lal-Chr13 5412479 5414242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0807 100 190 B3 DNA Binding Superfamily AT2G46530 38.462 1.21e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal13g0807 AUX_IAA 6.7e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0807 K14484 - qsu:112011057 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0705 12 5301882 5303525 Lal13g0807 13 5412479 5414242 LSH
Lal13g0807 13 5412479 5414242 Lal24g0626 24 4578218 4579818 LSH