Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0797 ATGGAGGGAAAGGAGAATTTTGTTGGTGTTGGTCATCCTCATGCAGTGGTAGGTGGTGAAGCTCCAGATAGCTTCCAATTGGGTCCTAGAATTGAAAACAACTTGGATTTTTCCAGAGCCACAGTGCCCGTTCCGGCACCGGCAACGGAGGGGAAGAAGAAGAGAGGGAGGCCTAGGAAGTATGGACCAGATGGTAAGGTTGCAGCCTTGGCTTTGTCTCCGATGCCGATTTCGTCTTCGATTCCGTTGACTGGAGATTTCTCAGCTTGGAAAAGGGAGAGAGGGAGGCCTGTTGAATCTGTAAAGAAGTCAATATATAAGTATGAAGTTGAAGGTCCAAGATCAGGTGAGGGGATTGCATACTCAGTTGGTGCCAATTTCACAGCACACGTGCTTACAGTAAATGCCGGCGAGGATATTACTATGAAGATTATGTCCTTTTCTCAACAAGGATCACATGCTATATGCATTCTCTCTGCAAATGGCATGATTTCAAATGTTACACTTCGTCAACCAACTTCTTCAGGGGGTACCCTAACATATGAGGGACGGTATGAGATTCTTTCATTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATAGCGAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGACCGGACGGTCGGGTGATGGGGGGTGGACTTGCGGGTTTGCTGATAGCTGCAGGTCCTGTGCAGGTTGTTGTTGGCAGTTTTCTTCCTGGTCACAAGCTGGAGCATAAACACAAGAAGCAGATTGTGGAGCATATATCAACTATTACCCCAACACATGCTAATCCTATCTCTACTAATGAGGGAATAAAAATCAGTTTTGGTGGATTTAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTATAACAATGTTCAAGACTCTAGGAACTCATCTTCTGATGATAAAGAACCTTTCGCCGAAAAGGAGTGTAATCCAAGCCAATAA 984 0.4512 MEGKENFVGVGHPHAVVGGEAPDSFQLGPRIENNLDFSRATVPVPAPATEGKKKRGRPRKYGPDGKVAALALSPMPISSSIPLTGDFSAWKRERGRPVESVKKSIYKYEVEGPRSGEGIAYSVGANFTAHVLTVNAGEDITMKIMSFSQQGSHAICILSANGMISNVTLRQPTSSGGTLTYEGRYEILSLSGSFMPTENGIARSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHKLEHKHKKQIVEHISTITPTHANPISTNEGIKISFGGFKPIMTPAAFQEENIASYNNVQDSRNSSSDDKEPFAEKECNPSQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0797 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 14 320 - -
Lal13g0797 327 Gene3D - 128 264 - -
Lal13g0797 327 CDD DUF296 130 242 IPR005175 -
Lal13g0797 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 244 - -
Lal13g0797 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 320 IPR039605 GO:0003680
Lal13g0797 327 MobiDBLite consensus disorder prediction 1 64 - -
Lal13g0797 327 ProSiteProfiles PPC domain profile profile. 124 266 IPR005175 -
Lal13g0797 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Lal13g0797 327 MobiDBLite consensus disorder prediction 309 327 - -
Lal13g0797 327 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0797 Lal-Chr13 5288974 5294217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0797 52 255 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 63.256 2.52e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0797 - - gmx:100789179 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0696 12 5197604 5203377 Lal13g0797 13 5288974 5294217 LSH
Lal13g0797 13 5288974 5294217 Lal24g0618 24 4499313 4504503 LSH
Lal9g0763 9 5350412 5356304 Lal13g0797 13 5288974 5294217 PCT
Lal13g0797 13 5288974 5294217 Lal9g0763 9 5350412 5356304 PCT