Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0796 ATGTCGAGATCGCTAGTGCAGCCGATAGGGCAGAAGAGGCTAACAAACGTGGCGGTGGTGCGTCTCAAGAAGCATGGCATGCGCTTTGAGATTGCCTGCTACCCAAACACTGTTCTTTCTTGGCGATCGGGAGTGGAGAAGGACATTGATGAAGTGTTGCAATCGCACACTGTTTATTCTAATGTTTCGAAAGGGGTTCTTGCCAAGTCAAAGGATTTGAATGCAGCTTTTGGGACTGACGATCAGTCCAAGATATGTTTAGAGATTTTAAAGAAAGGGGAGCTTCAGGTTGCTGGGAAAGAGAGGGAGTCTATCCTGTCAAGTCAGTTCAGGGATATTGCTACTATTGTGATGCAGAAGACCTACAATCCGGAGACTCAGCGCCCTTACACTATCAGTATGATTGAACGCCTTATGAGGGAAATTCATTTTGCTGTTGATCCAAATTGCACATCCAAGAAACAGGCTCTGGAGTTGATTCAAGAGCTTCAAAAGCATTTCCCAATAAAACGGTGTCCATTAAGAATACGTGTTGCTGCTCCCGAGGAGGAAGTTGCTGCCCTTTTAGAGAAGCTGAATGTATGGAAGGCAACCGTTGTTTCTAAAGAAGGATCTGCTGGTCAACTATCTGTTGTTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAACATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTCGATGGGGATACCCAAGTGGAGCAATACAACGATTACGAGGATATGCCTGCGCCATTGCCCAAAGAAACTCGTGAATCTTTGCTTGAACTGAATGATAAACTTCAAAAGCAGACAATTTCATCTGTGAGTAAGCCTACAACTGAGGGACAACAACAAAAGCAAAACAAGTGCAACACATGCAATGTTTCTTTTGAAGATGCTAAGGTATACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACTAGGCAACTGCCACCCCTTACTGAGGAAGAGTGCATTGCAGACTTGGAATTGAGTGACTCAAAATCTGATTTGAAAGATTATTCATTTTGA 1083 0.4312 MSRSLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLNAAFGTDDQSKICLEILKKGELQVAGKERESILSSQFRDIATIVMQKTYNPETQRPYTISMIERLMREIHFAVDPNCTSKKQALELIQELQKHFPIKRCPLRIRVAAPEEEVAALLEKLNVWKATVVSKEGSAGQLSVVFELEPGLYKDCHDFVMNNMHGRFEVLAHSLYVDGDTQVEQYNDYEDMPAPLPKETRESLLELNDKLQKQTISSVSKPTTEGQQQKQNKCNTCNVSFEDAKVYREHHKSEWHKHNMKRKTRQLPPLTEEECIADLELSDSKSDLKDYSF 360
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0796 360 Gene3D - 174 251 - -
Lal13g0796 360 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Lal13g0796 360 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Lal13g0796 360 Gene3D Classic Zinc Finger 289 344 - -
Lal13g0796 360 Gene3D - 100 172 IPR037188 -
Lal13g0796 360 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Lal13g0796 360 PANTHER BNAANNG06530D PROTEIN 1 360 - -
Lal13g0796 360 SUPERFAMILY beta-beta-alpha zinc fingers 290 330 IPR036236 -
Lal13g0796 360 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 228 IPR002140 GO:0042256
Lal13g0796 360 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Lal13g0796 360 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Lal13g0796 360 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Lal13g0796 360 Gene3D - 1 96 IPR036786 -
Lal13g0796 360 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 360 IPR039100 -
Lal13g0796 360 SUPERFAMILY FYSH domain 13 96 IPR036786 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal13g0796 Lal-Chr13 5284247 5287280 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0796 27 360 C2H2 Transcription Factor Family AT1G43860 58.261 5.99e-142 404
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0796 K14574 - gmx:100797497 596.66