Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal13g0796 | ATGTCGAGATCGCTAGTGCAGCCGATAGGGCAGAAGAGGCTAACAAACGTGGCGGTGGTGCGTCTCAAGAAGCATGGCATGCGCTTTGAGATTGCCTGCTACCCAAACACTGTTCTTTCTTGGCGATCGGGAGTGGAGAAGGACATTGATGAAGTGTTGCAATCGCACACTGTTTATTCTAATGTTTCGAAAGGGGTTCTTGCCAAGTCAAAGGATTTGAATGCAGCTTTTGGGACTGACGATCAGTCCAAGATATGTTTAGAGATTTTAAAGAAAGGGGAGCTTCAGGTTGCTGGGAAAGAGAGGGAGTCTATCCTGTCAAGTCAGTTCAGGGATATTGCTACTATTGTGATGCAGAAGACCTACAATCCGGAGACTCAGCGCCCTTACACTATCAGTATGATTGAACGCCTTATGAGGGAAATTCATTTTGCTGTTGATCCAAATTGCACATCCAAGAAACAGGCTCTGGAGTTGATTCAAGAGCTTCAAAAGCATTTCCCAATAAAACGGTGTCCATTAAGAATACGTGTTGCTGCTCCCGAGGAGGAAGTTGCTGCCCTTTTAGAGAAGCTGAATGTATGGAAGGCAACCGTTGTTTCTAAAGAAGGATCTGCTGGTCAACTATCTGTTGTTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAACATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTCGATGGGGATACCCAAGTGGAGCAATACAACGATTACGAGGATATGCCTGCGCCATTGCCCAAAGAAACTCGTGAATCTTTGCTTGAACTGAATGATAAACTTCAAAAGCAGACAATTTCATCTGTGAGTAAGCCTACAACTGAGGGACAACAACAAAAGCAAAACAAGTGCAACACATGCAATGTTTCTTTTGAAGATGCTAAGGTATACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACTAGGCAACTGCCACCCCTTACTGAGGAAGAGTGCATTGCAGACTTGGAATTGAGTGACTCAAAATCTGATTTGAAAGATTATTCATTTTGA | 1083 | 0.4312 | MSRSLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLNAAFGTDDQSKICLEILKKGELQVAGKERESILSSQFRDIATIVMQKTYNPETQRPYTISMIERLMREIHFAVDPNCTSKKQALELIQELQKHFPIKRCPLRIRVAAPEEEVAALLEKLNVWKATVVSKEGSAGQLSVVFELEPGLYKDCHDFVMNNMHGRFEVLAHSLYVDGDTQVEQYNDYEDMPAPLPKETRESLLELNDKLQKQTISSVSKPTTEGQQQKQNKCNTCNVSFEDAKVYREHHKSEWHKHNMKRKTRQLPPLTEEECIADLELSDSKSDLKDYSF | 360 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal13g0796 | 360 | Gene3D | - | 174 | 251 | - | - | |
Lal13g0796 | 360 | Pfam | SBDS protein, C-terminal domain | 175 | 238 | IPR046928 | - | |
Lal13g0796 | 360 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254 | |
Lal13g0796 | 360 | Gene3D | Classic Zinc Finger | 289 | 344 | - | - | |
Lal13g0796 | 360 | Gene3D | - | 100 | 172 | IPR037188 | - | |
Lal13g0796 | 360 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
Lal13g0796 | 360 | PANTHER | BNAANNG06530D PROTEIN | 1 | 360 | - | - | |
Lal13g0796 | 360 | SUPERFAMILY | beta-beta-alpha zinc fingers | 290 | 330 | IPR036236 | - | |
Lal13g0796 | 360 | TIGRFAM | RNA_SBDS: rRNA metabolism protein, SBDS family | 13 | 228 | IPR002140 | GO:0042256 | |
Lal13g0796 | 360 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
Lal13g0796 | 360 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 301 | 323 | IPR013087 | - | |
Lal13g0796 | 360 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
Lal13g0796 | 360 | Gene3D | - | 1 | 96 | IPR036786 | - | |
Lal13g0796 | 360 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 360 | IPR039100 | - | |
Lal13g0796 | 360 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal13g0796 | Lal-Chr13 | 5284247 | 5287280 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal13g0796 | 27 | 360 | C2H2 Transcription Factor Family | AT1G43860 | 58.261 | 5.99e-142 | 404 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal13g0796 | K14574 | - | gmx:100797497 | 596.66 |