Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0785 ATGGTCATTAGCGGAGGGAAGACTCTGAAGCGAATGAAAAGGAGAGTCACCGCAGACTTCTACGACTTCCTCTCTTTCCCGTCTCCTTCACTCGCCACGACGGAGAACTTCGCCGGACAACCGTTCCGTACCAACGTGCGATCATTCCTCACCAAGCACGCGCTTCTCCCGCCGCCCTCGGCTCTGTTCCCACACCTGATGACGTGGCAAATCCTCTTCCGAATCGGTGATCTCACCGACGGTTTCCCTGAGTCGGTTCCGGCGGTTGTGTGCCTCGACGTGGTGGAAGAAGACGTGGCCAGATCCAGATCCGTGTATTGCGACCAATGCCGAATTTTCGGCTGGAGTGGTCACCCAGTGTGTGGAAAACGTTACCATTTTATAATCAAAGCTGATGGGAGCTCCATTGGCGGGTACCACAAGCCGTGTATGTGCTGTGGAGATATCCTGCATTTGTCAGAACAGAGTGATAGATACCCAAATGGGTTAGGGGATCAGTGGAATGAGACATTGCTATGTGGGAGTGTTGCCACATATTTGGGAAGTAGTTGTGTTATCATGAGATTCTGCTTTATGCTCAAGGAGAGGGTAATTTCTTTTTGTTTGATTTTTAATGTTTTTGGGTGCAAGTCATGCAACCATGTTACAACCACTGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAGAACACAACTCATCTTTTACATGGTGTAGTCCATGCAAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGATGCCATATTATGGATTTCTGGGATCGCCTCTGCAAGACACTTGGAATTAGCTCAAAATACCTTAACCTTCTTGAAATGGCAGAGTACCTTTGTTCTGCATATTTCTGTGTACATGGATATAGCTTTGAGTTAAGCTCTTTAAGTTCACTTTTCTACATGGGCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGATTACCGCTTGCTCCATGCCATTATGAAGGGACATCCATGGTATGGTGACTGGGGCTATGAATTTGGGTCTGGCAGCTACTGTCTCACACAGGAAGCATATAAAAATGCTGTTGAAAACTTATCCAATCTACCCTTGTCGATCTTCCTATTCAACGGACAGAATCTCCACTCTCATTTGCAGGACATGCTCTCTTATTACCAGTCATTGTCAGAGCATAAGCTTGTAAATATGAGGGACCTCTTTTGTTTTTTGATGTATTTGATTAATGATGTTCGCAAGACTGTGCCAAGTGTTGATGACATAAACTGCAAGAAGCGCCGATTTAATGCTTCTGGAATTTCAAGTTCTTGGGAGAAGAATGACATTGAATGTGTGAAGGAGGCCATGCTCAGAGTGCTGCGAGCAGTGTCCGGGTCCAATTGGGTGAGCTGGCGTGCTGTCAGGGGTGCTGTTTGCAAGGTGGCCTCTCCAGAGCTTATTGATTATTGCCTTGGAGAACTGGAAGGAAAAGTGGTACATGGTGGAATGGTTGTCAACACCCGTTGCAATCCTCAAACTGGAACTTCAGAGTGCAGACTTGAGGCTGCAGATGATTCTTGCTACGGAATCATAGCAAACAACAATTCCTCAGGCTTAAAGTCTCCATCTGAAGAGAATCTCCTACAATGCTTGAAATATTTATACGAGTCTATGCTTCACCCTCAGATGATGCTAAAATATGTCACAGAAGAGAAAAGGATTCCTGCACTGACTTCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTTGAACTTGCTGACGAATCTGAAGATTGTGCAGGTAGAACTCCGCCAGAATTAATTGTGCTACCCATGAATGCCACAGTGTATGACCTTAAGGTAGAAGCAACAAATGCTTTTCAAGATATATATCTTATGTTTAGAAGATTTCAAGTTGATGAGCTACTTGGTTATCGCGGTGTAGATGATTCCACCCAAGTCAATCTCTTGTTAGGGTCAAATGAAACAGTTTGTATGCGAGGAAGGTTCATTGGGAAGAATGGATTGAGCAAGTTCCGAATGGAACGAGGACTTGAGAGGTGGACCGTAGATTGCAGCTGTGGGGCTAAGGATGATGATGGCGAAAGAATGTTAGCTTGTGATATATGTGAGGTGTGGCGGCACACTAGGTGCTCTGACATTCATGATACTGATCCTGTTCCAGCATGTTTTGTTTGCCCAAAATGTCTGAACTTTGACTCAAAAACTAAATCTAGTGGCCACTGCAAAGATGAGACTGTGACTAACGTTAGCACCGGTAGTAGTTGCTTTGGAAACGGCTTGCCAGTGCCTCGTGATTTTCGTTAA 2343 0.4503 MVISGGKTLKRMKRRVTADFYDFLSFPSPSLATTENFAGQPFRTNVRSFLTKHALLPPPSALFPHLMTWQILFRIGDLTDGFPESVPAVVCLDVVEEDVARSRSVYCDQCRIFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSEQSDRYPNGLGDQWNETLLCGSVATYLGSSCVIMRFCFMLKERVISFCLIFNVFGCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGISSKYLNLLEMAEYLCSAYFCVHGYSFELSSLSSLFYMGRKVSVMDVSKKYGLDYRLLHAIMKGHPWYGDWGYEFGSGSYCLTQEAYKNAVENLSNLPLSIFLFNGQNLHSHLQDMLSYYQSLSEHKLVNMRDLFCFLMYLINDVRKTVPSVDDINCKKRRFNASGISSSWEKNDIECVKEAMLRVLRAVSGSNWVSWRAVRGAVCKVASPELIDYCLGELEGKVVHGGMVVNTRCNPQTGTSECRLEAADDSCYGIIANNNSSGLKSPSEENLLQCLKYLYESMLHPQMMLKYVTEEKRIPALTSAQKLLDCKQFVELADESEDCAGRTPPELIVLPMNATVYDLKVEATNAFQDIYLMFRRFQVDELLGYRGVDDSTQVNLLLGSNETVCMRGRFIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICEVWRHTRCSDIHDTDPVPACFVCPKCLNFDSKTKSSGHCKDETVTNVSTGSSCFGNGLPVPRDFR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0785 780 CDD PHD_MMD1_like 696 741 - -
Lal13g0785 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 682 748 IPR013083 -
Lal13g0785 780 PANTHER OS01G0877500 PROTEIN 205 279 - -
Lal13g0785 780 PANTHER OS01G0877500 PROTEIN 318 753 - -
Lal13g0785 780 PANTHER OS01G0877500 PROTEIN 1 155 - -
Lal13g0785 780 ProSitePatterns Uncharacterized protein family UPF0054 signature. 237 247 IPR020549 -
Lal13g0785 780 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 318 753 - -
Lal13g0785 780 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 155 - -
Lal13g0785 780 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 205 279 - -
Lal13g0785 780 SMART PHD_3 696 742 IPR001965 -
Lal13g0785 780 SUPERFAMILY FYVE/PHD zinc finger 685 743 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0785 Lal-Chr13 5204704 5216295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0785 227 741 PHD Transcription Factor Family AT5G22260 28.322 1.61e-64 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0785 - - gmx:100818189 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0690 12 5095862 5101935 Lal13g0785 13 5204704 5216295 LSH