Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0761 ATGGGGACCGAGCTCATGAGAATATGTGTTAACGAAGATAGTGATGACTTTCCATCTGTTCCACCAGGTTTTGAGTCATATACAGCTTTCTCACTGAAGAGGGTTGATGACAATGAGAAACAAAATGATAAAAATATGACCAGCTGTTCAGTCTCTACTGGTGCTTCTGAATCACACTCCACTAAGGTGGAAACCGATGTCCATGTTAGTGATACTGCAAAGGTTCCTAGGACTCTTCGACGAAAACCATGGATTAACTATGGACGATATGAGAATAGTTCAGAGGAAGACTCTGATTCTGTGTGCTGTGATCAAGTTCGTTTGAACTTCTCCTCAAGACCTTGTCTACCTAGGGGAGTTATACGTGGATGTGCCGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCGGAGGCCAAATCTCGAGGATGCTCCTGTTTTCCACCCTACTGAAGAGGAGTTCCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGAGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTTCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGCGGTTCAATTAGAAAGATATCAAGGATTCAAAGTAATACAAAAAGGAAAAGGAGAAGATGCACAAGAATGGGAGTGGAAAATGGCACCGGAAATGTGGGATTTTGTGAGGCTGAAAGTTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATTCGGACGATTTTAAGGCCAAATATTTCAGAAAATATGATAATGTAGCGCATTGCGGAGAAAATACAACAATTTCAAATGGAACTTTAGAGCCGTCTGTGGAGAACATTGAAGGTGAATATTGGCGGATGGTTGAGAGCCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGTGTTTTTGGGAGTGGTTTTCCCAGAAAGCATAGTCATGCTTATTCTGCTTCACATGAACAATACATCAAATCTGGCTGGAATTTAAATAACTTCGCCAGGCTACCTGGATCTCTACTCTCTTATGAGAGCAGTGATATATCTGGTGTTTTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCACTTATACTCATTGAATTATATGCATTGGGGTGCTCCAAAACTGTGGTATGGTGTCCCTGGAAAAGATGCTTGTAAATTGGAAGAGGTCATGAGAAAGCATTTGCCAGAGCTTTTTGAGCAACAACCTGACTTGCTTCATAAACTGATCACTCAACTTTCTCCTTCCATCCTCAAGTCTAAAGGAGTTCCAGTTTATAGATGTGTGCAAAACCCTGGAGAGTTTGTTCTTACATTTCCTCGAGCCTACCACTCTGGCTTTAATTGCGGCTTCAACTGTGCAGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCTCATGGGCATGTTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAGAACTTCTATATCCCATGACAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTAAGAGCCCAGTGGGAGCTTAATTTGCTGAAGAAGAATTCCTTGGATAATCTACGATGGAAAGATGTCAGTGGAAAGGATGGCCTTCTGGCAAAAGCACTCAAGCTGTTAAGCTTGCTGAGCAAGCTCCTTTTCCCTGTTAATAAAATTAGACCTACAGTGACAGAGGACACTGCACGTGTTGAGATGGAACGGGCAAAAAGGGAATTTCTTTGCAGCTCTTCAAAGGCATCGAAAATGGAGAGTAGTTTTGATGCTACAAGTGAAAGGGAATGCATTGTTTGCCTTTTTGATTTACACCTCTCTGCAGCCGGTTGTTTCTGTTCCCCAAATAGATATGCTTGCTTGGATCATGCGAAGCAATTTTGTTCTTGCACTTGGGATTCCAAATTCTTCCTCTTTCGTTATGATATTAGTGAACTAAATATTCTTGTTGAGGCACTGGAAGGAAAATTAAGTGCAGTCTACAGGTGGGCGAAATTAGATCTTGGTCTGGCACTAACTTCTCATGTCTCGCCAGGCAAGGCAACAATACACAAGGAATTGAGATCGGATTCATCAATTTTGTCTCATTCTTCCAAGGGTAATGTGCATAAAGAGGTGGCTTTGCATCCATCAAATAAATTTATTGATGATTCCCGTTCAACAGATGTCCCAATAGAGAATCAAACACATGCAAAGAAAAGTAAAGATCCGAGCTATCTTCAACAGAGGAAATCAGCAGAAGCTGTACCTTCAATTCACATAAAGCATTTGTTAACAAATAATAGCTCAAAACCTACATGTGAGATGGTTATTCATAAGAACTCTGTTAACAAAGAAGGATGTCTTATTTCCGGATCAAAGCAGAGAACCCCTGGTTGTCAATTTTCTCAAAAGGACCTGTCAGGTGAGAAAAGTTCACTTTACAGACATGACAATCTGATACTTCTTAGTGATGATGACGGTGATGAAATTAAGATGTCAGATTCAAATAGTAGGAAGGAAAGTTTTCGTATGGTTACAGGTTCTACAGATAAAGCAAGCCCATGTAACAATATAGAAAATACCAACTTGATCATCCCTGTGACAGATGCTGCTGTGATGGGTGAAAAGAATGGTCCTACATTGCCTCGTGGAGATATGCGTTCTGGTTCAGCTCAGCTTTTGCATGTGAAACAGGAATGTCATGAAAACAGAGGACCAAATCTTGCTTTGGCCTCAGTAAATCTTAACGGTCATATAGGTCATACAACTGCAGAATCAGTTAGAAATATTCGAGCTTCTTCAGTAGGAGAGGCCAGCCATCATTGTTTGGAAAGTTCAGATAATTTACCTCTGAACCCACAACAGTCTGGCACTATCAAGGCCAAGAATGGGGGTATTCATGAAAAGCTTGGAGGGTGTGCCACTTCTAATGTAGCTGACAATGTAAAAGCTGTTAACGTAAACCTTTCTTGCAGTTTAAACAATTTGGAAAGGAATTCCCATCAGAAAGGTCCTCGTATTGCCAAGGTTGTTCGGCGTATCAACTGCAATGTTGAACCTTTAGAGTTTGGAGTTGTGCTTCCTGGAAAGTCATGGTGCAGCAGTCAGGCTATATTCCCAAGGGGATTTAAAAGCCGTGTTAGGTACATAAGTGTTTTAGATCCATCCAGTACTATGTCTTATTACATTTCAGAAATTCTTGATGCTGGACGTGGTGGACCTCTATTTATGCCCTTCAAGACGAATATTTTGCTTAACTACAATACAGTCTGGGTATCCAATTTTCAAGATGAAGTTAGTGCTGTTAGTGATTTTCACTTGGAATTGGGAAGAGTTGATGTGGCAGTTACTAAATTATGTTCTCCCCAGGTTTCCTTGGAAAATTGTCCAAGTGAGGTTTTCATTCATGTTTCACCTGCAAGATGCTGGGAACTTGTAAGAGAGAGAGTGAATCAAGAGATCGCAAAACAACACAAGCTGGGAAAAAAAGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCCTCTCCAGCTATAGTGCAGGCAATTGAGGCACTAGATCGAAGTCGAGTTTGTAATGAATATTGGGACTCCCGACCCTACTCCCGCCCTCAAGGGCAAATTTCACGACCTCATCAAACCAATATAAATGGTGGAAATGGTGCAGGAGTGCTCATAGATCAGCACTTGCCCGTTGGAGTTGTTGCAATACTAAGAAACCTATTTAAAAAAGCTAATGCGGAAGAATTGAACTCATTGTACACCATTTTTAGTGACAATAAGGCAGCAGCTGGCCGGATGCAAATTGCGCAACTTCTGAATGAAGAAATTCACAACTCAAAAGTTCACAACCCTCCTCCTAGGTGA 3987 0.4179 MGTELMRICVNEDSDDFPSVPPGFESYTAFSLKRVDDNEKQNDKNMTSCSVSTGASESHSTKVETDVHVSDTAKVPRTLRRKPWINYGRYENSSEEDSDSVCCDQVRLNFSSRPCLPRGVIRGCADCSNCQKVVARWRPEDARRPNLEDAPVFHPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSIWEGSKFSTRVQRIDKLQNRGSIRKISRIQSNTKRKRRRCTRMGVENGTGNVGFCEAESFGFEPGPEFTLETFQRYSDDFKAKYFRKYDNVAHCGENTTISNGTLEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPRKHSHAYSASHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDACKLEEVMRKHLPELFEQQPDLLHKLITQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHVAIELYREQGRRTSISHDKLLLGAAREAVRAQWELNLLKKNSLDNLRWKDVSGKDGLLAKALKLLSLLSKLLFPVNKIRPTVTEDTARVEMERAKREFLCSSSKASKMESSFDATSERECIVCLFDLHLSAAGCFCSPNRYACLDHAKQFCSCTWDSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSHVSPGKATIHKELRSDSSILSHSSKGNVHKEVALHPSNKFIDDSRSTDVPIENQTHAKKSKDPSYLQQRKSAEAVPSIHIKHLLTNNSSKPTCEMVIHKNSVNKEGCLISGSKQRTPGCQFSQKDLSGEKSSLYRHDNLILLSDDDGDEIKMSDSNSRKESFRMVTGSTDKASPCNNIENTNLIIPVTDAAVMGEKNGPTLPRGDMRSGSAQLLHVKQECHENRGPNLALASVNLNGHIGHTTAESVRNIRASSVGEASHHCLESSDNLPLNPQQSGTIKAKNGGIHEKLGGCATSNVADNVKAVNVNLSCSLNNLERNSHQKGPRIAKVVRRINCNVEPLEFGVVLPGKSWCSSQAIFPRGFKSRVRYISVLDPSSTMSYYISEILDAGRGGPLFMPFKTNILLNYNTVWVSNFQDEVSAVSDFHLELGRVDVAVTKLCSPQVSLENCPSEVFIHVSPARCWELVRERVNQEIAKQHKLGKKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPQGQISRPHQTNINGGNGAGVLIDQHLPVGVVAILRNLFKKANAEELNSLYTIFSDNKAAAGRMQIAQLLNEEIHNSKVHNPPPR 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0761 1328 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1156 1319 - -
Lal13g0761 1328 PANTHER LYSINE-SPECIFIC DEMETHYLASE 74 578 - -
Lal13g0761 1328 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1016 1109 - -
Lal13g0761 1328 PANTHER LYSINE-SPECIFIC DEMETHYLASE 602 758 - -
Lal13g0761 1328 MobiDBLite consensus disorder prediction 44 60 - -
Lal13g0761 1328 Gene3D Cupin 135 506 - -
Lal13g0761 1328 SMART fyrn_3 1056 1101 IPR003888 GO:0005634
Lal13g0761 1328 ProSiteProfiles JmjN domain profile. 150 191 IPR003349 -
Lal13g0761 1328 SMART fyrc_3 1155 1247 IPR003889 GO:0005634
Lal13g0761 1328 Coils Coil 1011 1031 - -
Lal13g0761 1328 Pfam jmjN domain 151 184 IPR003349 -
Lal13g0761 1328 Pfam F/Y rich C-terminus 1156 1235 IPR003889 GO:0005634
Lal13g0761 1328 Gene3D - 1049 1233 - -
Lal13g0761 1328 PANTHER JUMONJI 14-RELATED 74 578 - -
Lal13g0761 1328 PANTHER JUMONJI 14-RELATED 1016 1109 - -
Lal13g0761 1328 PANTHER JUMONJI 14-RELATED 1156 1319 - -
Lal13g0761 1328 PANTHER JUMONJI 14-RELATED 602 758 - -
Lal13g0761 1328 MobiDBLite consensus disorder prediction 38 69 - -
Lal13g0761 1328 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Lal13g0761 1328 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Lal13g0761 1328 SMART cupin_9 359 522 IPR003347 -
Lal13g0761 1328 SMART JmjN_1 149 190 IPR003349 -
Lal13g0761 1328 Pfam F/Y-rich N-terminus 1054 1094 IPR003888 GO:0005634
Lal13g0761 1328 SUPERFAMILY Clavaminate synthase-like 354 549 - -
Lal13g0761 1328 ProSiteProfiles FYR domain FYRC motif profile. 1149 1239 IPR003889 GO:0005634
Lal13g0761 1328 Pfam C5HC2 zinc finger 635 685 IPR004198 -
Lal13g0761 1328 ProSiteProfiles FYR domain FYRN motif profile. 1042 1101 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0761 Lal-Chr13 4984806 4993291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0761 1 1321 JUMONJI Transcription Factor Family AT1G08620 51.446 0.0 1208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal13g0761 JmjC 1.9e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0761 - - lang:109345364 2072.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0761 13 4984806 4993291 Lal13g0761 13 4984806 4993291 ECH
Lal12g0670 12 4894214 4904880 Lal13g0761 13 4984806 4993291 LSH