Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0754 ATGAAGACAATATTAGAGGAAGAAAACGATGTCGTTTTGGCTCCACCAACAAATTTTTCAATGGTTGAGGAGAGCATTTACCGTTCTAGCTTCCCTCGACCTTGCAATTTTCCCTTTCTCCAAACCCTAAATCTTCGATCCATCATATACTTGTGCCCTGAACCCTATCCACAGCAAAATTTGGACTTTCTTCAATCACAAAATATTCAACTCTTTCAATTTGGGATTGAGGGCAAAACGGATCTTACTGTATCTACTGTTAATGATACTATAATGGAGTCTGTTAAAGTTTTAATTGATGTGAGAAATCATCCAGTTTTGATTCACTGCAATCGTGGAAAGCATCGAACTGGTTGCCTTGTTGGGTGCCTAAGAAAATTTCAGAATTGGTGTTTGACTTATATATTTGAAGAGTACAAGCAATTTGCAGGTGCTAAATCCAGGAATACAGATTTGAAATTCATAGAAAAATTTGACACCATAAACTTGAGACAGTGCCTTTACAGCATCATATATCAGTACCAAGGATATGCCTCCAAAAAGCAACGCTTGATGTATAAAGATGATAATTTACAAAAGCCTCAATTGGCATCAGCATAG 600 0.3683 MKTILEEENDVVLAPPTNFSMVEESIYRSSFPRPCNFPFLQTLNLRSIIYLCPEPYPQQNLDFLQSQNIQLFQFGIEGKTDLTVSTVNDTIMESVKVLIDVRNHPVLIHCNRGKHRTGCLVGCLRKFQNWCLTYIFEEYKQFAGAKSRNTDLKFIEKFDTINLRQCLYSIIYQYQGYASKKQRLMYKDDNLQKPQLASA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0754 199 ProSiteProfiles Dual specificity protein phosphatase domain profile. 18 167 IPR020422 GO:0006470|GO:0008138
Lal13g0754 199 Gene3D Protein tyrosine phosphatase superfamily 12 161 IPR029021 -
Lal13g0754 199 ProSitePatterns Tyrosine specific protein phosphatases active site. 108 118 IPR016130 GO:0016311|GO:0016791
Lal13g0754 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 7 182 - -
Lal13g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 13 30 IPR020428 GO:0016791
Lal13g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 50 63 IPR020428 GO:0016791
Lal13g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 69 83 IPR020428 GO:0016791
Lal13g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 86 100 IPR020428 GO:0016791
Lal13g0754 199 CDD PFA-DSP_Siw14 13 159 - -
Lal13g0754 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 156 IPR029021 -
Lal13g0754 199 Pfam Tyrosine phosphatase family 15 160 IPR004861 -
Lal13g0754 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE 7 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0754 Lal-Chr13 4924316 4927031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0754 6 199 Protein tyrosine phosphatase (PTP) family AT3G02800 63.402 4.90e-97 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0754 K18045 - qsu:112008997 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0754 13 4924316 4927031 Lal24g0578 24 4103820 4105668 LSH