Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0753 ATGGAATTTCATCCTCCTATTCCTACTTCACACATAGATGCAATGTGGCAAATGAAATTGATATCCAGTGAAACAATGGAAGCTGGAACTTATCCAGAGCGTCCTGGAGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGTACTATTTGAAGACGGGAACTTGCAAATTTGGAGCTACATGCAAGTTTCATCATCCAAGAGAGCAGGCTGGGAGTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCACTCCGCCCTAATGAGCCTGAATGCACTTATTATTTAAGAACAGGACAGTGTAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATGTGATTCTTTCATTAAGAGGTTCTCCTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAACAATCATATGCTGGAGGAATTGCAAATTGGCCAAGAGCATCTTATATTGCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATACACCTTTAGTTCTACCTCAAGGAGTGGTCTCAGTGCCTGGGTGGAGTGCTTACAGTGGTCAAATGAGATCAATCTCTGCTTCCGTTAGTCCACAACAAATAATAGAAAATGGTCAGACATATGGAACTTCTCGCCAAGATGAAGTAGCAAATGCAGGACCACAAGGGGAATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTTGGGTTTTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCTGTCTGTCGGTTCCACCATCCGCGTGAGAGGCTGGTTCCTGTTCCCGACTGTGTTTTGAGTCCAATAGGCCTTCCTTTGCGTCCTGGAGAGCCCTTGTGTGTTTTCTATTCGCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAATTTGACCACCCAATGGGAATCTTCACCTATAACTTATCTGCATCGCCTTCAGCTGAGGCCCCAGGCCGCAGTCCGTTAGGTTCTTCGTCAGGAACAGCTGCATTAAATTTATCATCAGGACTTGCTGAGTCAGGATCGTCAAAGTCCAGGAGGCTTTCAATATCAGAGACAAGACAGATTCCTTCCGGTGATGATGACATTGATGATGAGGGATGA 1215 0.4469 MEFHPPIPTSHIDAMWQMKLISSETMEAGTYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLYYLKTGTCKFGATCKFHHPREQAGSAGRVALNTLGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNVILSLRGSPVYPTVQSPTTPGQQSYAGGIANWPRASYIASPRWQGPSSYTPLVLPQGVVSVPGWSAYSGQMRSISASVSPQQIIENGQTYGTSRQDEVANAGPQGEYSQFRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLVPVPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNLSASPSAEAPGRSPLGSSSGTAALNLSSGLAESGSSKSRRLSISETRQIPSGDDDIDDEG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0753 404 MobiDBLite consensus disorder prediction 372 404 - -
Lal13g0753 404 SMART c3hfinal6 265 292 IPR000571 GO:0046872
Lal13g0753 404 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lal13g0753 404 SMART c3hfinal6 62 85 IPR000571 GO:0046872
Lal13g0753 404 SMART c3hfinal6 311 338 IPR000571 GO:0046872
Lal13g0753 404 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Lal13g0753 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 338 IPR000571 GO:0046872
Lal13g0753 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 61 IPR000571 GO:0046872
Lal13g0753 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 292 IPR000571 GO:0046872
Lal13g0753 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 107 131 IPR000571 GO:0046872
Lal13g0753 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 85 IPR000571 GO:0046872
Lal13g0753 404 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Lal13g0753 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 66 403 - -
Lal13g0753 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 65 - -
Lal13g0753 404 MobiDBLite consensus disorder prediction 372 393 - -
Lal13g0753 404 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Lal13g0753 404 Gene3D - 66 139 - -
Lal13g0753 404 Gene3D - 263 348 - -
Lal13g0753 404 SUPERFAMILY CCCH zinc finger 107 132 IPR036855 GO:0046872
Lal13g0753 404 Gene3D - 13 65 - -
Lal13g0753 404 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lal13g0753 404 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872
Lal13g0753 404 ProSiteProfiles Zinc finger C3H1-type profile. 66 86 IPR000571 GO:0046872
Lal13g0753 404 PANTHER PROTEIN PHOSPHATASE RELATED 66 403 - -
Lal13g0753 404 PANTHER PROTEIN PHOSPHATASE RELATED 10 65 - -
Lal13g0753 404 SUPERFAMILY CCCH zinc finger 314 338 IPR036855 GO:0046872
Lal13g0753 404 SUPERFAMILY CCCH zinc finger 39 62 IPR036855 GO:0046872
Lal13g0753 404 SUPERFAMILY CCCH zinc finger 269 295 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0753 Lal-Chr13 4912738 4921083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0753 15 402 C2H2 Transcription Factor Family AT3G02830 58.173 2.33e-158 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal13g0753 zf-CCCH 4.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0753 - - lang:109354276 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0753 13 4912738 4921083 Lal13g0753 13 4912738 4921083 ECH
Lal13g0753 13 4912738 4921083 Lal24g0577 24 4090584 4097655 LSH