Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0728 ATGTGTTCAATAGTTAACAAACAATACGAATTGTGTGAAGAAATCGGTCGTGGTCGTTTCGGCACCATCTTCCGTTGTTTGAACCCAACCACTAACGAAGTCTTTGCCTGCAAAATCATCAACAAAACCCTCTTAACTGATTCAACTGATCGTAACTGTCTCCATAACGAACCCAAATACATGACCCTCCTTTCTCCACACCCTAACATCCTCCAAATCTATCATTTCTCCGAAAACGACGACGTTTTATCCATCGTTATGGAACTTTGTCAACCCCTAACCTTATTTGAAAGGATTCTCAAAACCAATGGTTCTAACACTTTAACGGAGCCACAATCAGCTTTCATCATGCATCAACTTCTTTCAGCTTTAGCCCATTGCCACCGTCTCGGTGTGGCTCATCGTGATATTAAACCAGACAACATTTTATTCGATTCGAGGGATAATCTTAAATTAGCGGATTTTGGTTCCGCTGAGTGGTTCGGTGAGGGGAAGAAGATGAGTGGGATCGTCGGAACGCCGTATTATGTGGCGCCGGAGATTTTGATGGGGAGAGAGTATGATGAGAAGGTTGATGTTTGGAGCTGTGGTGTGATTTTGTATATAATGTTGTCTGGGATTCCACCGTTTTATGGTGATGATGCTGCTCAGATTTTTGAAGCTGTTGTTAGGGGTAATCTTAGGTTTCCTTCAAAGTTGTTTAGGTCTGTGTCCTCTTCTGCTAAGGATCTATTGAGGAAGATGCTTTGTAGGGATGCTTCTAGAAGATTCTCCGCTGAACAAGCCTTGAGGCATCCTTGGATCTTGAGAGGAGGAGAGACAGTTGAAAATTAA 834 0.4269 MCSIVNKQYELCEEIGRGRFGTIFRCLNPTTNEVFACKIINKTLLTDSTDRNCLHNEPKYMTLLSPHPNILQIYHFSENDDVLSIVMELCQPLTLFERILKTNGSNTLTEPQSAFIMHQLLSALAHCHRLGVAHRDIKPDNILFDSRDNLKLADFGSAEWFGEGKKMSGIVGTPYYVAPEILMGREYDEKVDVWSCGVILYIMLSGIPPFYGDDAAQIFEAVVRGNLRFPSKLFRSVSSSAKDLLRKMLCRDASRRFSAEQALRHPWILRGGETVEN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0728 277 SMART serkin_6 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0728 277 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal13g0728 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lal13g0728 277 ProSiteProfiles Protein kinase domain profile. 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0728 277 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Lal13g0728 277 Gene3D Transferase(Phosphotransferase) domain 1 94 277 - -
Lal13g0728 277 PIRSF ILK 2 264 - -
Lal13g0728 277 CDD STKc_CAMK 8 267 - -
Lal13g0728 277 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 275 - -
Lal13g0728 277 SUPERFAMILY Protein kinase-like (PK-like) 4 269 IPR011009 -
Lal13g0728 277 Pfam Protein kinase domain 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0728 277 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 5 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0728 Lal-Chr13 4763103 4764678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0728 9 274 EF-hand Containing Proteins AT1G50700 41.636 7.14e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal13g0728 Pkinase 9.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0728 - K08794 gmx:548089 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0728 13 4763103 4764678 Lal13g0728 13 4763103 4764678 ECH
Lal13g0728 13 4763103 4764678 Lal24g0558 24 3948497 3950698 LSH