Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0725 ATGGCGACACCTTCTTCAACATCGCAATCGCACTTCACCTATTCCAACAACGTCTCCTCCTCCTACTTCCCCGTTCCAATTCACCTTCAGCAACACTCCACCACGCACTACACTCCACACTACCTTCCCACGGCGGTTCAATTCCCTCTTCCTCCGGTTATCGGTCCCGTTCTTCCTCCGCCACCGGTTGCTTCCGTGTATTCCGTGCCTCAGTATCCGGCACAGCAATTGTTTGAGCGAGATGCACAGATAATAACACCAGAGGCTCTTGAGAGCGTTAAGGCAGCAATTGCAAACAGTGAGGTTGAGAATAAATCTGACACTAAAAAGAAAGCGATTCCTCGCAAAGCTGCTGGTCAAACTTGGGAGGATCCTGTTCTTGCCGAGTGGCCAGAAGATGACTATCGGCTTTTTTGTGGTGATCTCGGTAATGAAGTGAATGATGATGTTCTTTCTAAAGCATTTTCACGATTCCCTTCCTTTAACATCGCACGAGTTGTCAGAGACAAACGGACTGGTAAAACAAAGGGTTATGGATTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCCGCACTTAAAGAAATGAATGGTAAATATGTTGGAAATAGACCAATAAAGTTACGCAAGAGTAAGTGGAAGGAGAGAACAGATCTCGAGGCCCTGGAAAAACAGAAGAACCAAACTCTGAAGAAACCTAAACTTCCCAGGAAGAGTGTTCTGCACAAGTGA 732 0.4658 MATPSSTSQSHFTYSNNVSSSYFPVPIHLQQHSTTHYTPHYLPTAVQFPLPPVIGPVLPPPPVASVYSVPQYPAQQLFERDAQIITPEALESVKAAIANSEVENKSDTKKKAIPRKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDLEALEKQKNQTLKKPKLPRKSVLHK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0725 243 Gene3D - 85 227 IPR012677 -
Lal13g0725 243 SUPERFAMILY RNA-binding domain, RBD 118 215 IPR035979 GO:0003676
Lal13g0725 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 207 IPR000504 GO:0003723
Lal13g0725 243 MobiDBLite consensus disorder prediction 224 243 - -
Lal13g0725 243 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 48 243 - -
Lal13g0725 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Lal13g0725 243 PANTHER RNA-BINDING PROTEIN 42-LIKE 48 243 - -
Lal13g0725 243 SMART rrm1_1 136 209 IPR000504 GO:0003723
Lal13g0725 243 CDD RRM_RBM42 129 211 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0725 Lal-Chr13 4742697 4746003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0725 133 221 Eukaryotic Initiation Factors Gene Family AT2G23350 36.264 1.74e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0725 K25079 - gmx:100800281 367.466