Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0719 ATGTCTTCTTCATCTTATCCCGTTCTTCCTACTTCCTCAGTGCAGGCTGCATCAATAAATTCCCAAGTTGGAAATGCTGGACACATGTTTTCAACTCCTGCTGGTTTCCCTGATAACATCCCATTTTCACCTGTCTCAGAAATGTACTCTCCAACTTTCATTTCTCACCCTCATGAAAGTGGTGATATTTCATGGGAACCGGACCTGTTTCAGGATTTTATTCAGTTTCCTGATAGTGTTCCTGTCCAGAACAATCACGTGGAAAATAGTGCTTCTTACATATCCGGTGACATTGCCCAAACAACTGATCTTGTGGAATGGGTTGATGTTGATCAGTTACTGTCAGTTGATGATTGTCTTCTCCCAAATTGGAGTCCTCTTCTTGGTGATGATAATGTTGCAGAACCAAAGCCAGAGGAGATCCAGGTTTCACAGCAACAACATGCACACTGTACAGAAGTTAATGGTCTTCCTAACTCAGTGTCAACTACACCACAAACGAAGTCAAGAATGCGTTGGACTCCCGAACTTCATGAGGCTTTTGTGGAAGCAGTCAATCAGCTTGGCGGCAAGGCTACTCCAAAGGGTGTCTTGAAGCTGATGAAAGTTGAAGGCCTTACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGCCATCAGAAGTAACTTCTGTGAAAAAATTGGCTGAAGTCGAAGAAATGAAGTCTCTAGACTTAAAAACGAGCAAGGGGATTACCGAAACACTACGGATGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAACGAGAACTACAGATTCAAATTGAAAACCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAACAGATAGAGAAGGACAAGTCTGCTGCTTTGATATCAAATACAGTGGCGGTGCTACCGTCTCCCGTAGAGAGTTTAGAAACAAATGCGAAAATTCAAATCAACAGTAACACTCCAGAAACCTTGCTTGAAGAAAGTACCCAGGATGCAAGCACAAAACAAAAGAGAGATGATGCTAAAAATGCTAGTGAACATGAGCTGGGAGGTGACCAGTTTGCTGCACCACTCTCAAAACGGATGAAGAGTTTATGA 1131 0.4279 MSSSSYPVLPTSSVQAASINSQVGNAGHMFSTPAGFPDNIPFSPVSEMYSPTFISHPHESGDISWEPDLFQDFIQFPDSVPVQNNHVENSASYISGDIAQTTDLVEWVDVDQLLSVDDCLLPNWSPLLGDDNVAEPKPEEIQVSQQQHAHCTEVNGLPNSVSTTPQTKSRMRWTPELHEAFVEAVNQLGGKATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYKPEPSEVTSVKKLAEVEEMKSLDLKTSKGITETLRMQMELQKRLHEQLEIQRELQIQIENQGKRLQMMFEKQIEKDKSAALISNTVAVLPSPVESLETNAKIQINSNTPETLLEESTQDASTKQKRDDAKNASEHELGGDQFAAPLSKRMKSL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0719 376 Gene3D - 167 224 - -
Lal13g0719 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 223 IPR017930 -
Lal13g0719 376 SUPERFAMILY Homeodomain-like 166 220 IPR009057 -
Lal13g0719 376 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 10 375 - -
Lal13g0719 376 MobiDBLite consensus disorder prediction 329 376 - -
Lal13g0719 376 Pfam Myb-like DNA-binding domain 170 219 IPR001005 -
Lal13g0719 376 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 220 IPR006447 GO:0003677
Lal13g0719 376 Pfam MYB-CC type transfactor, LHEQLE motif 253 296 IPR025756 -
Lal13g0719 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 10 375 IPR044848 GO:0003700
Lal13g0719 376 MobiDBLite consensus disorder prediction 342 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0719 Lal-Chr13 4707368 4711232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0719 21 333 G2-like Transcription Factor Family AT4G28610 44.092 1.82e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal13g0719 Myb_DNA-binding 3.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0719 - - mtr:MTR_1g080330 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0639 12 4666526 4670125 Lal13g0719 13 4707368 4711232 ECH
Lal13g0719 13 4707368 4711232 Lal13g0719 13 4707368 4711232 ECH