Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0718 ATGGCTCCTGATCCAAGAGTTGCTAAGGCCTTTAATGCTTCGAGGGCATTAGGAATTCCCGACGAAGAAATGAAGCCAGTGTTGAAATACTTGTTAAAAGTGTATGGTGGAAAGTGGGAACTTATTGAAGAAGACAATTATCGGACACTTGTGGATGCATACTTTGAACTAAAGGAGGATAAGGAAACAGAAGGTAAGAGAAAAGCTCCAAGCAGTGATAATGACCGTGAAAGACCAAGACAGAAACTGAACTCAGTAGATGGAGATGAGCAGGTTTTGTCAAGTGGCAAATCAAGACAAGTCTCCATAAAAAAAGATACCGAAATACAGGGGAATTCTGAATATCCAATTGATGGACCTTGTGTTTCTCATATCCAGAGGGAAAAGATGGCAAGTGATCATCATCAGAAGAAGCTCATGACCCCAAAAATTGACAAACCTCTTATTCTCATGCCGAATGATGGTGTTCAGAATGAGCTCAAGACACCAAGAGTTGAGAAACCGAAGTCACTTCATGGACCTGGGTCAGCGAGTCACAGAGGCCCACCTAAAGAATCTTCAATTGGAAACGTTCGTGTGAAGTCTCTGACAACTCTGTACCAGTACCATGAGAAAGATGATACACTTGATGATCAAGATACAAGTAGAATTTCCCCCAAGTTTCTCAGCGACATAACAAAAGGTTCAGAAAATGTCAAGATATCTTTATTAGATGAAACGGGAAGAGAGGAATTGCCAAAGTTTAATTACACACCGTGTAATATAATATACCAATGTGCTAATGTCAATATTTCACTAGCGCGTATTGCGGATCAGGGTTGTTGTTCTGATTGTTCTGGGGACTGTCTTTCCTTACCATTTCCTTGCGCTTGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACACAACAAGGTTTGCTGAAAGAAGAATTTCTAGAAGATTGCATCTCTATGAAGAATGAACCCAAAGATCATCACTTTCTGTATTGTCAAGAATGCCCCTTGGAGAGGTCTAAGAACGAAATCAAGCCTGAACCATGCAAGGGGCATATGGTTAAGAAGTTTATAAAGGAATGTTGGAGGAAGTGCGGATGTGACATGCAGTGTGGAAATCGTGTAGTGCAAAGAGGTTTAACATGCAAATTGCAGGTGTTCTTGACTGGTGAAGGAAAAGGGTGGGGCGTTCGAGCACTGGAAGAGTTGCCGAAGGGAAGCTATGTCTGCGAATATGCTGGGGAGATATTAACCAATACAGAATTATATGAAAGGACTGTGCGTATTGGCGGCAATGAGAAACATACATATCCCGTAACCCTGGATGCAGATTGGGGTTCAGAAGGGGTGTTAAAGGATGAGGAGGCACTGTGCTTAGATGCTACATTTAATGGAAATGTTGCAAGGTTTATCAATCATAGGTGCTCGGATGCAAATCTGTTAGACGTTCCAGTTGAAGTGGAGACTCCTGATCGTCACTATTATCATCTTGCGCTCTTTACAAACAGAAAAGTGAAAGCATTGGAGGAGTTGACATGGTCCGCAACAATGACACGAGATAATCTTTATTGGCTGAGTCACGACCAGGTTGCTCTCTTTAAGACATTTCGTGGTACTGCCTCAAGGTGCAAGCAGACTATCAACCACGCCGTCCCCAAGATAAAACAGCTCAACTCTCTGTTTATACGATATCTTACTGCACTTGCCACGGAAAGAAAGGGAGAGAAAGTAGGCCGGAATTGCGTCGACAGAATTTAA 1752 0.4241 MAPDPRVAKAFNASRALGIPDEEMKPVLKYLLKVYGGKWELIEEDNYRTLVDAYFELKEDKETEGKRKAPSSDNDRERPRQKLNSVDGDEQVLSSGKSRQVSIKKDTEIQGNSEYPIDGPCVSHIQREKMASDHHQKKLMTPKIDKPLILMPNDGVQNELKTPRVEKPKSLHGPGSASHRGPPKESSIGNVRVKSLTTLYQYHEKDDTLDDQDTSRISPKFLSDITKGSENVKISLLDETGREELPKFNYTPCNIIYQCANVNISLARIADQGCCSDCSGDCLSLPFPCACAQETGGEFAYTQQGLLKEEFLEDCISMKNEPKDHHFLYCQECPLERSKNEIKPEPCKGHMVKKFIKECWRKCGCDMQCGNRVVQRGLTCKLQVFLTGEGKGWGVRALEELPKGSYVCEYAGEILTNTELYERTVRIGGNEKHTYPVTLDADWGSEGVLKDEEALCLDATFNGNVARFINHRCSDANLLDVPVEVETPDRHYYHLALFTNRKVKALEELTWSATMTRDNLYWLSHDQVALFKTFRGTASRCKQTINHAVPKIKQLNSLFIRYLTALATERKGEKVGRNCVDRI 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0718 583 Pfam Ubiquitin-binding WIYLD domain 5 59 IPR018848 GO:0018024
Lal13g0718 583 SMART preset_2 222 364 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal13g0718 583 Pfam Pre-SET motif 225 372 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal13g0718 583 MobiDBLite consensus disorder prediction 59 85 - -
Lal13g0718 583 ProSiteProfiles SET domain profile. 380 514 IPR001214 GO:0005515
Lal13g0718 583 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 580 IPR025776 -
Lal13g0718 583 Gene3D SET domain 200 516 IPR046341 -
Lal13g0718 583 SUPERFAMILY SET domain 221 512 IPR046341 -
Lal13g0718 583 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 186 - -
Lal13g0718 583 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 215 519 - -
Lal13g0718 583 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 186 - -
Lal13g0718 583 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 215 519 - -
Lal13g0718 583 CDD SET_SETDB-like 246 512 - -
Lal13g0718 583 Pfam SET domain 392 512 IPR001214 GO:0005515
Lal13g0718 583 SMART set_7 380 520 IPR001214 GO:0005515
Lal13g0718 583 MobiDBLite consensus disorder prediction 164 189 - -
Lal13g0718 583 Gene3D - 1 60 IPR043017 -
Lal13g0718 583 ProSiteProfiles Pre-SET domain profile. 274 377 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal13g0718 583 MobiDBLite consensus disorder prediction 87 109 - -
Lal13g0718 583 MobiDBLite consensus disorder prediction 59 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0718 Lal-Chr13 4693629 4697698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0718 356 510 C2H2 Transcription Factor Family AT2G23740 42.308 2.83e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal13g0718 Pre-SET 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0718 - - mtr:MTR_1g080340 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0860 12 7027892 7035647 Lal13g0718 13 4693629 4697698 LSH
Lal13g0718 13 4693629 4697698 Lal11g1083 11 14503762 14511761 PCT