Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0711 ATGGCTGTTTCTGCACAAACCAAGCCTAAGAAAACTGTGTCGTCTAAGAAGCCTCTCTCCCACCCTCCCTTCGCTGAGATGATAAGTGATGCGATTGTGAGTTTGAAAGAGAGAACCGGTTCAAGCCAAATTGCGATCTCGAAGTTCATAGAAGAAAAGCATAAGGATCTACCTGCAACCTTCAAGAAGCTTCTTCTCCTCAATCTGAAGAAATCTGTTGCCGCTGGGAAACTCGTTAAGGTTAAGAACTCCTTCAAGATCGCTCCTACTGTTAAAGCTTCGGTGAAGGCTGCTTCTATTGATGATAAGAAGCTTAAAACTGTGGCTAAGCCCAAAGCTGCTACTGTAGCCAAGGTTCATGCCAAAGCTGCCGTGAAATCAAAGGCTGTTACTAAGCCGAAGGTAAAAGCTGTGTCTGCCGGTGCTAAAACGAAGGCGAAGATTGTGAAATCGCCGGCGAAGAAGGTTGCTGCTAAGCCGGTGAAGAAGGCGCCGGTGAAGAGCGTGAAGAAACCGAAGAGTGTGAAATCGCCGGTGAAGAAAGTAGCGGCTAAGAAGGCTAAGAAACTCGACCCTAGACCCAGAGTTAAATCGACCCTAAATATTCACAGGATGATAGTCGAAGCTATTTTGAATCTGAAAGAAAGAACCGGTTCAAGCCAATATGCGATAGCGAAGTTCATAGAAGAAAAGCATAAGGACTTACCTGCAACCTTCAAGAAGCTCATTCTCCACAATCTAAAGAAATCTGTTGCCGCTGGAAAACTCGTTAAGGTCAAATGCTCATTCAAGCTTGCTCCTACTGTTAAAGCTGTTGTTGTTGCTGATTCGAAGAAGCCTAAAACCGTGTCTAAACCGAATGCGAAGACTGTATCCAAGGCTAAACCTAAAACCACTGCGAAATCGGAAGCTATAACCAAACCTAAGGCAAAGGCTGTATCCGGTGGTGCCAAGGCGAAAGTGAAGATTGTGAAATCGCCGGTGAAGAAGGTGGATGCTAAGCCGGCGAAGAAGGCGCCGCTGAAGACTGTGAAGAAGACTAAGAGTGTGAAATCGCCGGTGAAAAAAGTAGCGGCGAAGAAGGCTAAGAAATGA 1095 0.4584 MAVSAQTKPKKTVSSKKPLSHPPFAEMISDAIVSLKERTGSSQIAISKFIEEKHKDLPATFKKLLLLNLKKSVAAGKLVKVKNSFKIAPTVKASVKAASIDDKKLKTVAKPKAATVAKVHAKAAVKSKAVTKPKVKAVSAGAKTKAKIVKSPAKKVAAKPVKKAPVKSVKKPKSVKSPVKKVAAKKAKKLDPRPRVKSTLNIHRMIVEAILNLKERTGSSQYAIAKFIEEKHKDLPATFKKLILHNLKKSVAAGKLVKVKCSFKLAPTVKAVVVADSKKPKTVSKPNAKTVSKAKPKTTAKSEAITKPKAKAVSGGAKAKVKIVKSPVKKVDAKPAKKAPLKTVKKTKSVKSPVKKVAAKKAKK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0711 364 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 186 - -
Lal13g0711 364 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 185 361 - -
Lal13g0711 364 Pfam linker histone H1 and H5 family 203 265 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal13g0711 364 Pfam linker histone H1 and H5 family 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal13g0711 364 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal13g0711 364 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal13g0711 364 PRINTS Histone H5 signature 105 119 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal13g0711 364 PRINTS Histone H5 signature 167 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lal13g0711 364 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal13g0711 364 MobiDBLite consensus disorder prediction 159 192 - -
Lal13g0711 364 MobiDBLite consensus disorder prediction 281 306 - -
Lal13g0711 364 Gene3D - 15 102 IPR036388 -
Lal13g0711 364 Gene3D - 196 281 IPR036388 -
Lal13g0711 364 MobiDBLite consensus disorder prediction 284 299 - -
Lal13g0711 364 CDD H15 20 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal13g0711 364 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal13g0711 364 SMART h15plus2 192 262 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal13g0711 364 MobiDBLite consensus disorder prediction 328 364 - -
Lal13g0711 364 SUPERFAMILY "Winged helix" DNA-binding domain 199 270 IPR036390 -
Lal13g0711 364 MobiDBLite consensus disorder prediction 340 364 - -
Lal13g0711 364 MobiDBLite consensus disorder prediction 159 193 - -
Lal13g0711 364 PANTHER HISTONE H1 185 361 - -
Lal13g0711 364 PANTHER HISTONE H1 3 186 - -
Lal13g0711 364 MobiDBLite consensus disorder prediction 1 22 - -
Lal13g0711 364 SUPERFAMILY "Winged helix" DNA-binding domain 17 97 IPR036390 -
Lal13g0711 364 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 198 267 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal13g0711 364 CDD H15 205 278 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0711 Lal-Chr13 4617588 4621628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0711 13 87 Single Myb Histone (SMH) Gene Family AT1G49950 38.961 2.01e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0711 K11275 - gmx:100785055 137.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0711 13 4617588 4621628 Lal24g0545 24 3838861 3839799 LSH