Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0707 ATGGTTGGAGGAAGAGTTGTGAAAGTGAAGAGAGATACGCTACGAGCATGCATGACATGTCCTCTTTGCCATAATCTCTTCAAATATCCTACCACTATCTCTCTCTGTCTTCATACCTTTTGTAGGAAGTGCATATATGAGAAATTCTCAGATGAGGAGGTGGATTGCTGTCCGGTGTGCAATATCGATCTAGGCTGCCTTCCAGCCGAAAAACTCAGGCCAGACCATAATTTGCAAGACATAAGGGCAAAAATATTCCCTTTTAAAAAGAAAAATATCAAGACCCCAGAAGTCCTGTCTTCAATATCCCTGCCTGCAAAGAGAAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCAAAAGTTTCGATGCAAACCGGCTTTACGGGAAAGAGAACAAAAACCAGTACAAGGAAGGCTGCTGGTTTACGTGGATGCAGTTTTAGTCTTGAACAATCCATAAAGAAGGAACAAACATTTGGAGAAGATAATAAGGACTCTTCCATAGCCGAGCCTTCTAAAAAGCACAAGACCAATGAAGATACAGACAACAGTGTGGATCTTACAGAAGGGAAGGCTGATCTGTGGACACCATTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCTAGATCAATTTCACAAGCAAGTCCTTCCAAATTAGAGAATCCAACTACTCCTCATGGTGGAGTACATCTGTCTGAAAATGCAAATAAACCAGAGCTACCTGCTTCTGTCCATGATGAATTAAACATTTCTAAACCCAAAAATAAGGATAATGGACATAAAACAAAATTTGGAGACGACAAGGATGGAAGTAGCTTGCCTTCAAGGCCAGTGAAGCGAAAGAGGTTACGTCCTGCAGGTCAGAAAAGAGTTGAAGCATCTGAGATGTCTGCCTCAGCCCAAGTCGCGTTAGATGCTTCTAGGGGCAAGTACAACAGAAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCCTGCCACAGATCTCAGCATGTTACTTAAGGATAAAGGATGGTACAGTACCTGTCTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTCGCCAGTGAAGCAGAGGTGGAAATATTGTGCCGGGGTCAGCCAGTACTTCCATCTCTGCAACTGCATAACTTAGTAGATCTTTGGTTTCAGACAGCTTCGACCTCAAAAAAGATCCCAGCATCTGTGGGATCCTCGGCTAAGGATTTTGTGATGGTTTTATCATATTGTGTAAAGCCCTTGCTTACTTGA 1296 0.4228 MVGGRVVKVKRDTLRACMTCPLCHNLFKYPTTISLCLHTFCRKCIYEKFSDEEVDCCPVCNIDLGCLPAEKLRPDHNLQDIRAKIFPFKKKNIKTPEVLSSISLPAKRKERSLSSLVVSAPKVSMQTGFTGKRTKTSTRKAAGLRGCSFSLEQSIKKEQTFGEDNKDSSIAEPSKKHKTNEDTDNSVDLTEGKADLWTPLNCLVEAANRTKSSRSISQASPSKLENPTTPHGGVHLSENANKPELPASVHDELNISKPKNKDNGHKTKFGDDKDGSSLPSRPVKRKRLRPAGQKRVEASEMSASAQVALDASRGKYNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEILCRGQPVLPSLQLHNLVDLWFQTASTSKKIPASVGSSAKDFVMVLSYCVKPLLT 431
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0707 431 MobiDBLite consensus disorder prediction 209 235 - -
Lal13g0707 431 SUPERFAMILY RING/U-box 14 85 - -
Lal13g0707 431 MobiDBLite consensus disorder prediction 158 190 - -
Lal13g0707 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 113 IPR013083 -
Lal13g0707 431 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Lal13g0707 431 Gene3D - 302 408 - -
Lal13g0707 431 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 427 - -
Lal13g0707 431 MobiDBLite consensus disorder prediction 209 241 - -
Lal13g0707 431 SMART ring_2 20 60 IPR001841 -
Lal13g0707 431 MobiDBLite consensus disorder prediction 158 189 - -
Lal13g0707 431 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Lal13g0707 431 Pfam RING-type zinc-finger 20 51 IPR027370 -
Lal13g0707 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 427 IPR044807 GO:0004842
Lal13g0707 431 MobiDBLite consensus disorder prediction 253 299 - -
Lal13g0707 431 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal13g0707 Lal-Chr13 4600322 4605169 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0707 1 350 C3H Transcription Factor Family AT2G30580 43.935 1.87e-88 270
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0707 K16277 - gmx:100783999 706.057
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1906 1 21282004 21293960 Lal13g0707 13 4600322 4605169 ECH
Lal13g0707 13 4600322 4605169 Lal13g0707 13 4600322 4605169 ECH
Lal13g0707 13 4600322 4605169 Lal24g0542 24 3824981 3829648 LSH