Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal13g0707 | ATGGTTGGAGGAAGAGTTGTGAAAGTGAAGAGAGATACGCTACGAGCATGCATGACATGTCCTCTTTGCCATAATCTCTTCAAATATCCTACCACTATCTCTCTCTGTCTTCATACCTTTTGTAGGAAGTGCATATATGAGAAATTCTCAGATGAGGAGGTGGATTGCTGTCCGGTGTGCAATATCGATCTAGGCTGCCTTCCAGCCGAAAAACTCAGGCCAGACCATAATTTGCAAGACATAAGGGCAAAAATATTCCCTTTTAAAAAGAAAAATATCAAGACCCCAGAAGTCCTGTCTTCAATATCCCTGCCTGCAAAGAGAAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCAAAAGTTTCGATGCAAACCGGCTTTACGGGAAAGAGAACAAAAACCAGTACAAGGAAGGCTGCTGGTTTACGTGGATGCAGTTTTAGTCTTGAACAATCCATAAAGAAGGAACAAACATTTGGAGAAGATAATAAGGACTCTTCCATAGCCGAGCCTTCTAAAAAGCACAAGACCAATGAAGATACAGACAACAGTGTGGATCTTACAGAAGGGAAGGCTGATCTGTGGACACCATTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCTAGATCAATTTCACAAGCAAGTCCTTCCAAATTAGAGAATCCAACTACTCCTCATGGTGGAGTACATCTGTCTGAAAATGCAAATAAACCAGAGCTACCTGCTTCTGTCCATGATGAATTAAACATTTCTAAACCCAAAAATAAGGATAATGGACATAAAACAAAATTTGGAGACGACAAGGATGGAAGTAGCTTGCCTTCAAGGCCAGTGAAGCGAAAGAGGTTACGTCCTGCAGGTCAGAAAAGAGTTGAAGCATCTGAGATGTCTGCCTCAGCCCAAGTCGCGTTAGATGCTTCTAGGGGCAAGTACAACAGAAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCCTGCCACAGATCTCAGCATGTTACTTAAGGATAAAGGATGGTACAGTACCTGTCTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTCGCCAGTGAAGCAGAGGTGGAAATATTGTGCCGGGGTCAGCCAGTACTTCCATCTCTGCAACTGCATAACTTAGTAGATCTTTGGTTTCAGACAGCTTCGACCTCAAAAAAGATCCCAGCATCTGTGGGATCCTCGGCTAAGGATTTTGTGATGGTTTTATCATATTGTGTAAAGCCCTTGCTTACTTGA | 1296 | 0.4228 | MVGGRVVKVKRDTLRACMTCPLCHNLFKYPTTISLCLHTFCRKCIYEKFSDEEVDCCPVCNIDLGCLPAEKLRPDHNLQDIRAKIFPFKKKNIKTPEVLSSISLPAKRKERSLSSLVVSAPKVSMQTGFTGKRTKTSTRKAAGLRGCSFSLEQSIKKEQTFGEDNKDSSIAEPSKKHKTNEDTDNSVDLTEGKADLWTPLNCLVEAANRTKSSRSISQASPSKLENPTTPHGGVHLSENANKPELPASVHDELNISKPKNKDNGHKTKFGDDKDGSSLPSRPVKRKRLRPAGQKRVEASEMSASAQVALDASRGKYNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEILCRGQPVLPSLQLHNLVDLWFQTASTSKKIPASVGSSAKDFVMVLSYCVKPLLT | 431 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal13g0707 | 431 | MobiDBLite | consensus disorder prediction | 209 | 235 | - | - | |
Lal13g0707 | 431 | SUPERFAMILY | RING/U-box | 14 | 85 | - | - | |
Lal13g0707 | 431 | MobiDBLite | consensus disorder prediction | 158 | 190 | - | - | |
Lal13g0707 | 431 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 113 | IPR013083 | - | |
Lal13g0707 | 431 | ProSitePatterns | Zinc finger RING-type signature. | 36 | 45 | IPR017907 | - | |
Lal13g0707 | 431 | Gene3D | - | 302 | 408 | - | - | |
Lal13g0707 | 431 | PANTHER | UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED | 4 | 427 | - | - | |
Lal13g0707 | 431 | MobiDBLite | consensus disorder prediction | 209 | 241 | - | - | |
Lal13g0707 | 431 | SMART | ring_2 | 20 | 60 | IPR001841 | - | |
Lal13g0707 | 431 | MobiDBLite | consensus disorder prediction | 158 | 189 | - | - | |
Lal13g0707 | 431 | ProSiteProfiles | Zinc finger RING-type profile. | 20 | 61 | IPR001841 | - | |
Lal13g0707 | 431 | Pfam | RING-type zinc-finger | 20 | 51 | IPR027370 | - | |
Lal13g0707 | 431 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 4 | 427 | IPR044807 | GO:0004842 | |
Lal13g0707 | 431 | MobiDBLite | consensus disorder prediction | 253 | 299 | - | - | |
Lal13g0707 | 431 | MobiDBLite | consensus disorder prediction | 254 | 281 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal13g0707 | Lal-Chr13 | 4600322 | 4605169 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal13g0707 | 1 | 350 | C3H Transcription Factor Family | AT2G30580 | 43.935 | 1.87e-88 | 270 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal13g0707 | K16277 | - | gmx:100783999 | 706.057 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal1g1906 | 1 | 21282004 | 21293960 | Lal13g0707 | 13 | 4600322 | 4605169 | ECH | |
Lal13g0707 | 13 | 4600322 | 4605169 | Lal13g0707 | 13 | 4600322 | 4605169 | ECH | |
Lal13g0707 | 13 | 4600322 | 4605169 | Lal24g0542 | 24 | 3824981 | 3829648 | LSH |