Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0706 ATGCCAAGTAGTGTTGTTATGGAGAGAGAGTTGGGAGACAAGTACAAGATGATAGATTTTGAAGAAACTGAGTTGAGACTCGGTCTGCCTGGTGAGTCAGCAGCACTGAAAAGCACTTGTAATAATATTACTGGGAAGAGAGGTTTCTCTGAGACCACTACTGCTATGGATTTGAAGCTTAATCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTACCAATAATGATGACTCATCTGTTGCTGTAGAGAAAGCCAAAGATAATATTACTACTTATGCTGCTACAACTGCTTCTCGTGCTAATGACCCAGCAAAACCACCTACCAAGGCACAAGTTGTAGGTTGGCCACCCGTTCGATCATTCAGAAAGAACATAGTGAATAATGTTCAAAGGAACAACAATGATGAAGCAGAAAAGAAAGTTAGCACCACAAATAACCAAGGTTTCAATAATAATAATAATAGTGTAGGTGCTTTTGTGAAAGTGAGCATGGATGGTGCACCTTATCTACGCAAGGTGGATTTGAAGTTATACAAAAGCTATCAAGAGCTGTCAGATGCCCTAGCTAAAATGTTCAGTTCCTTCACAGTTGGCAAATGTGGGGCCCAAGGCATGAAGGACTTCATGAATGAGAGTAAATTGATAGATCTATTAAATGGCTCTGACTATGTACCCACATATGAAGACAAAGATGGTGATTGGATGCTAGTGGGTGATGTGCCATGGGAAATGTTTGTTCAATCATGCAAACGCCTTCGCGTAATGAAAGGTTCTGAGGCAATTGGGCTAGCACCAAGGGCAGTGGAAAAGTGCAAGAATAGAAGCTGA 828 0.4082 MPSSVVMERELGDKYKMIDFEETELRLGLPGESAALKSTCNNITGKRGFSETTTAMDLKLNLSSSSSSSSSTTNNDDSSVAVEKAKDNITTYAATTASRANDPAKPPTKAQVVGWPPVRSFRKNIVNNVQRNNNDEAEKKVSTTNNQGFNNNNNSVGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTVGKCGAQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRVMKGSEAIGLAPRAVEKCKNRS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0706 275 Pfam AUX/IAA family 22 266 IPR033389 -
Lal13g0706 275 SUPERFAMILY CAD & PB1 domains 150 256 - -
Lal13g0706 275 ProSiteProfiles PB1 domain profile. 157 257 IPR000270 GO:0005515
Lal13g0706 275 MobiDBLite consensus disorder prediction 62 79 - -
Lal13g0706 275 PANTHER AUXIN-INDUCED PROTEIN AUX28 15 268 - -
Lal13g0706 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 268 IPR003311 GO:0005634|GO:0006355
Lal13g0706 275 Gene3D - 151 269 - -
Lal13g0706 275 MobiDBLite consensus disorder prediction 62 81 - -
Lal13g0706 275 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0706 Lal-Chr13 4592041 4595435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0706 161 260 B3 DNA Binding Superfamily AT3G61830 34.000 1.42e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal13g0706 AUX_IAA 7.7e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0706 K14484 - gmx:100796888 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0625 12 4528620 4532036 Lal13g0706 13 4592041 4595435 ECH
Lal12g0181 12 1262558 1265160 Lal13g0706 13 4592041 4595435 ECH
Lal13g0706 13 4592041 4595435 Lal13g0706 13 4592041 4595435 ECH