Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0705 ATGGCTGGTAATGGGTCTGAAGGGTTGGGTGATGATTTCTTTGAGCAGATCTTAGCAGTTCCTGAAGCCTCATATGGGAGGAGTTTAACTGATGTGGGGTCCATCCCAATGGGGTTGCAATTGGGTTCCTCTAGTGTTGGGTTGAGAGGAGGAAGGTCCTTAGGAATTGGGGGGGGTATGCCTTTAGGGTTAAATTTGGAGCAAGGTGCTTTTCTGAAACACCAAGGTGCTGGTCATGATGTTGAGGGTAACATTACCAATAATCATAGTCATAATCATTATCAACAACAACTTAATAATAACAATAATATTAGTAACAACAATAGCACCTCTTCATCTTCCTCTTCTACCGCAGGAATCAATGATAGGGATTTGCAAATTAGAGGTATGTTTTCAGGGTTTGGACAATTGCATAATGCTCCTCCTCCTACACATGCTCATGCTCATGCTCACTCTATTCGCCCCACGTTGCTATCTCCTCAGCCCCAACAACAACTTCACCTCCACCATCATCATCAACAGCACTTTCAAAGCCAGGCACAACCTCCAGTGTCTGTTGCTGCTATGCCACAACAACCACCCGGCATTCGCCCTCGAGTTCGAGCTAGAAGAGGGCAAGCCACAGACCCACACAGTATTGCTGAAAGGTTGCGCCGCGAAAGAATCGCAGAGAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACCGATAGAGCCGCAATGCTTGATGAAATTATGGAATATGTGAAGTTCCTAAGGCTCCAAGTTAAGGTCCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTTGCTCAGCTTGTCTCTGATGCTCCCTTTTCTGCACTAGAGAGGGAGGATAGTGAAGGTGAAGGCAATCAGCAAGCATGGGAGAAGTGGTCAAATGATGGCACAGAACAACAAGTTGCTAAACTGATGGAAGAAGATGTTGGAGCTGCTATGCAATTTCTTCAATCTAAGGCACTTTGTATCATGCCTTTATCTCTAGCTTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCATCACTCATTAAACCTGAATCAAACAACCACTCATAG 1089 0.4518 MAGNGSEGLGDDFFEQILAVPEASYGRSLTDVGSIPMGLQLGSSSVGLRGGRSLGIGGGMPLGLNLEQGAFLKHQGAGHDVEGNITNNHSHNHYQQQLNNNNNISNNNSTSSSSSSTAGINDRDLQIRGMFSGFGQLHNAPPPTHAHAHAHSIRPTLLSPQPQQQLHLHHHHQQHFQSQAQPPVSVAAMPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIMEYVKFLRLQVKVLSMSRLGGAGAVAQLVSDAPFSALEREDSEGEGNQQAWEKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPLSLASAIFRMPQSEASSLIKPESNNHS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0705 362 MobiDBLite consensus disorder prediction 286 305 - -
Lal13g0705 362 MobiDBLite consensus disorder prediction 133 152 - -
Lal13g0705 362 Pfam Helix-loop-helix DNA-binding domain 211 255 IPR011598 GO:0046983
Lal13g0705 362 MobiDBLite consensus disorder prediction 78 120 - -
Lal13g0705 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 349 - -
Lal13g0705 362 MobiDBLite consensus disorder prediction 81 120 - -
Lal13g0705 362 SMART finulus 212 261 IPR011598 GO:0046983
Lal13g0705 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Lal13g0705 362 MobiDBLite consensus disorder prediction 161 210 - -
Lal13g0705 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 265 IPR036638 GO:0046983
Lal13g0705 362 Gene3D - 201 263 IPR036638 GO:0046983
Lal13g0705 362 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0705 Lal-Chr13 4578794 4583255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0705 175 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.872 2.32e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0705 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0705 - - lang:109355094 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0183 12 1281693 1285913 Lal13g0705 13 4578794 4583255 ECH
Lal13g0705 13 4578794 4583255 Lal13g0705 13 4578794 4583255 ECH
Lal13g0705 13 4578794 4583255 Lal24g0541 24 3816750 3821134 LSH