Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0695 ATGGAGGAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTCGGTTCTGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAAAAGTATGTTCTGAAGAAGATTCAGCTTGCCCGCCAAACCGAGCGCTCTCGTAGATCTGCACACCAGGAGATGGACCTCATCTCTAAATTGCAAAACCCATTTATTGTGGAGTATAAAGATTCGTGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAAGCTAATGGCGTCTTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTACGGCACTTGATTACTTGCATGTGAAACATATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACTAAAGATCATGACATACGTCTTGGTGATTTTGGACTGGCCAAAATTTTGACTAGTGATGACCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCCGATATACCTTATGGTTCTAAATCAGATATTTGGTCATTGGGATGTTGTATATATGAAATGACATCACATAAGACAGCATTCAAAGCATTTGATATACGATCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCTCTGCCAGCAAAATATTCTGGTTCATTTCGAAGTCTTGTTAAAAGCATGTTGCGGAAAAATCCAGAGCTCAGACCCAGTGCTGCAGAGCTCCTTGGGCACCCATATCTTCAACCCTATATTCGTAAGGTCCATCTCAAAATCAATAGCCCCAGGCGAAGTACATTACCAGTTCATTGGCCAGAATCCAACTATGGGAAGAAAACTAGATTTGTGGATCCAGAAGATGATCGAATTCCCACCTATAAGGATAAGCGGTATTCTTTCTGCAATGACCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTATATGCTCTACCCTTGAAATAGATTGTATTCCTGATCATATAAATCAACGGTTAGCAGAATTAGGTGTTGGAGATAGCCATGAAGTGAAGTCAATCCATAAGTCTGTTTCCAAAACATTTAGTTTTGCTAATACTCCAAGGCTGACTCCATCTGAAGTTTCTGTCACCAACAAGAAAGTAATGGAATCCTCTAAGAATCGTAAAGTAGTAACGCAAACTCTTCCTGTTTCACGCAATACCACAAAATATGCTCATGCCAACAGCAGAGCATCATTTCCACTGCCAAGGGGTGGTACTCAGCAGCTGCCTTCCTGCAGGCCCAATATTGGTTTGCTAAGCCATGTATCTTCGCCAGACATCTCATTTAACTCTCCCGTTTTTGATAAGATAGTTGAATTTCCATTAGCGTCAAATGAAGATTCATTGTTTTCCGTCAATAGAACACCAACATCTGCACAGGATTCTGCTGGCTACCCACCCGGTGGCAATCATTCAACTGTGATAGACAAATGCACAGTACAGGTAGATAATAGAGCTAGTTGTACGGATGATTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATCAATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTCCATTAAGCCACACCTCTTCAGACTTGCGCCGCCGACAGTTTGACACTTCATCATACCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCGAGATTGCTACAGCAGGCAAGGTATGACGAACTTGGGGTTTTGTTGAAACCATTTGGGCCCGAAAAGGTTTCCCCGAGGGAAACTGCTATCTGGTTGAGTAAGAGCATCAAAGAGAACACTCTCAGCCCTGAAGAATCCCCATGA 1860 0.4231 MEEYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIQLARQTERSRRSAHQEMDLISKLQNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLTALDYLHVKHILHRDVKCSNIFLTKDHDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKTAFKAFDIRSLINKINKSIVAPLPAKYSGSFRSLVKSMLRKNPELRPSAAELLGHPYLQPYIRKVHLKINSPRRSTLPVHWPESNYGKKTRFVDPEDDRIPTYKDKRYSFCNDRTLNPSVSGADQDSICSTLEIDCIPDHINQRLAELGVGDSHEVKSIHKSVSKTFSFANTPRLTPSEVSVTNKKVMESSKNRKVVTQTLPVSRNTTKYAHANSRASFPLPRGGTQQLPSCRPNIGLLSHVSSPDISFNSPVFDKIVEFPLASNEDSLFSVNRTPTSAQDSAGYPPGGNHSTVIDKCTVQVDNRASCTDDWQGIKRSMLKEINEDKSGSSDQNATAGPLSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSIKENTLSPEESP 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0695 619 PANTHER SERINE/THREONINE-KINASE NEK4 1 604 - -
Lal13g0695 619 MobiDBLite consensus disorder prediction 529 545 - -
Lal13g0695 619 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lal13g0695 619 Gene3D Transferase(Phosphotransferase) domain 1 84 275 - -
Lal13g0695 619 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0695 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lal13g0695 619 SUPERFAMILY Protein kinase-like (PK-like) 1 301 IPR011009 -
Lal13g0695 619 MobiDBLite consensus disorder prediction 523 554 - -
Lal13g0695 619 Pfam Protein kinase domain 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0695 619 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 604 - -
Lal13g0695 619 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal13g0695 619 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0695 619 CDD STKc_Nek 4 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0695 Lal-Chr13 4522238 4529382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0695 1 261 MAP Kinase Kinase Gene Family AT4G26070 33.948 4.64e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal13g0695 Pkinase 5.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0695 K08857 - gmx:100804898 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0695 13 4522238 4529382 Lal13g0695 13 4522238 4529382 ECH
Lal13g0695 13 4522238 4529382 Lal24g0538 24 3797511 3805648 LSH
Lal5g0088 5 849502 856462 Lal13g0695 13 4522238 4529382 PCT
Lal3g1503 3 20813583 20823392 Lal13g0695 13 4522238 4529382 PCT
Lal13g0695 13 4522238 4529382 Lal5g0088 5 849502 856462 PCT
Lal13g0695 13 4522238 4529382 Lal3g1503 3 20813583 20823392 PCT